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Cluster: Rep_1004_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1004_c_17 Rep_1004_c_17_59 58238 59926 - 2.A.53.3.9
pfam Rep_1004_c_17 Rep_1004_c_17_60 60159 60644 - HbpS-like
pfam Rep_1004_c_17 Rep_1004_c_17_61 60783 64256 - DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter | MFD_D3
TC Rep_1004_c_17 Rep_1004_c_17_62 64566 65768 + 3.A.1.125.1
TC Rep_1004_c_17 Rep_1004_c_17_63 65761 66465 + 3.A.1.125.1
TC Rep_1004_c_17 Rep_1004_c_17_64 66465 67712 + 3.A.1.125.1
STP Rep_1004_c_17 Rep_1004_c_17_65 67766 68686 + Glucokinase
pfam Rep_1004_c_17 Rep_1004_c_17_66 68698 69534 + SIR2
TC Rep_1004_c_17 Rep_1004_c_17_67 69583 70626 - 3.A.1.11.1
TF Rep_1004_c_17 Rep_1004_c_17_68 70863 71564 + HTH_6
CAZyme Rep_1004_c_17 Rep_1004_c_17_69 71582 72967 - GH4
TC Rep_1004_c_17 Rep_1004_c_17_70 72992 74551 - 4.A.1.1.8
TC Rep_1004_c_17 Rep_1004_c_17_71 74771 75553 - 3.A.1.11.1
TC Rep_1004_c_17 Rep_1004_c_17_72 75550 76410 - 3.A.1.11.1
TC Rep_1004_c_17 Rep_1004_c_17_73 76394 77509 - 3.A.1.11.1
peptidase Rep_1004_c_17 Rep_1004_c_17_74 77865 79094 + M20.003
pfam Rep_1004_c_17 Rep_1004_c_17_75 79394 80533 + Peptidase_S74 | Gp34_trimer
TC Rep_1004_c_17 Rep_1004_c_17_76 80626 82803 + 1.C.1.3.1
Gene ID: Rep_1004_c_17_59
Type: TC
Location: 58238 - 59926 (-)
Gene ID: Rep_1004_c_17_60
Type: pfam
Location: 60159 - 60644 (-)
Gene ID: Rep_1004_c_17_61
Type: pfam
Location: 60783 - 64256 (-)
Gene ID: Rep_1004_c_17_62
Type: TC
Location: 64566 - 65768 (+)
Gene ID: Rep_1004_c_17_63
Type: TC
Location: 65761 - 66465 (+)
Gene ID: Rep_1004_c_17_64
Type: TC
Location: 66465 - 67712 (+)
Gene ID: Rep_1004_c_17_65
Type: STP
Location: 67766 - 68686 (+)
Gene ID: Rep_1004_c_17_66
Type: pfam
Location: 68698 - 69534 (+)
Gene ID: Rep_1004_c_17_67
Type: TC
Location: 69583 - 70626 (-)
Gene ID: Rep_1004_c_17_68
Type: TF
Location: 70863 - 71564 (+)
Gene ID: Rep_1004_c_17_69
Type: CAZyme
Location: 71582 - 72967 (-)
Gene ID: Rep_1004_c_17_70
Type: TC
Location: 72992 - 74551 (-)
Gene ID: Rep_1004_c_17_71
Type: TC
Location: 74771 - 75553 (-)
Gene ID: Rep_1004_c_17_72
Type: TC
Location: 75550 - 76410 (-)
Gene ID: Rep_1004_c_17_73
Type: TC
Location: 76394 - 77509 (-)
Gene ID: Rep_1004_c_17_74
Type: peptidase
Location: 77865 - 79094 (+)
Gene ID: Rep_1004_c_17_75
Type: pfam
Location: 79394 - 80533 (+)
Gene ID: Rep_1004_c_17_76
Type: TC
Location: 80626 - 82803 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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