Cluster: Rep_1004_CGC22
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1004
- CGC Family ID: CGCFAM_08508
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1004_c_15 | Rep_1004_c_15_129 | 148684 | 149403 | - | 1.B.19.1.1 |
| pfam | Rep_1004_c_15 | Rep_1004_c_15_130 | 149400 | 150080 | - | OprB |
| CAZyme | Rep_1004_c_15 | Rep_1004_c_15_131 | 150205 | 151608 | - | GH1 |
| TC | Rep_1004_c_15 | Rep_1004_c_15_132 | 151623 | 153485 | - | 4.A.1.2.2 |
| pfam | Rep_1004_c_15 | Rep_1004_c_15_133 | 154151 | 154900 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| TC | Rep_1004_c_15 | Rep_1004_c_15_134 | 154933 | 156099 | - | 2.A.1.2.65 |
Gene ID: Rep_1004_c_15_129
Type: TC
Location: 148684 - 149403 (-)
Type: TC
Location: 148684 - 149403 (-)
Gene ID: Rep_1004_c_15_130
Type: pfam
Location: 149400 - 150080 (-)
Type: pfam
Location: 149400 - 150080 (-)
Gene ID: Rep_1004_c_15_131
Type: CAZyme
Location: 150205 - 151608 (-)
Type: CAZyme
Location: 150205 - 151608 (-)
Gene ID: Rep_1004_c_15_132
Type: TC
Location: 151623 - 153485 (-)
Type: TC
Location: 151623 - 153485 (-)
Gene ID: Rep_1004_c_15_133
Type: pfam
Location: 154151 - 154900 (+)
Type: pfam
Location: 154151 - 154900 (+)
Gene ID: Rep_1004_c_15_134
Type: TC
Location: 154933 - 156099 (-)
Type: TC
Location: 154933 - 156099 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia
Species
Serratia marcescens_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.