Cluster: Rep_1004_CGC17
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1004
- CGC Family ID: CGCFAM_07313
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1004_c_14 | Rep_1004_c_14_821 | 877435 | 878865 | - | AA10 | CBM73 |
| TC | Rep_1004_c_14 | Rep_1004_c_14_822 | 879119 | 879481 | + | 8.A.2.1.1 |
| TC | Rep_1004_c_14 | Rep_1004_c_14_823 | 879478 | 880293 | - | 3.A.15.1.1 |
| pfam | Rep_1004_c_14 | Rep_1004_c_14_824 | 880330 | 880776 | - | T2SSM |
| pfam | Rep_1004_c_14 | Rep_1004_c_14_825 | 880773 | 881861 | - | T2SSL |
| TC | Rep_1004_c_14 | Rep_1004_c_14_826 | 881907 | 882809 | - | 3.A.15.1.1 |
| TC | Rep_1004_c_14 | Rep_1004_c_14_827 | 882806 | 883417 | - | 3.A.15.1.1 |
| TC | Rep_1004_c_14 | Rep_1004_c_14_828 | 883414 | 883791 | - | 3.A.15.1.1 |
| TC | Rep_1004_c_14 | Rep_1004_c_14_829 | 883775 | 884245 | - | 3.A.15.1.1 |
| TC | Rep_1004_c_14 | Rep_1004_c_14_830 | 884242 | 884715 | - | 3.A.15.1.1 |
| TC | Rep_1004_c_14 | Rep_1004_c_14_831 | 884718 | 885929 | - | 3.A.15.1.1 |
| TC | Rep_1004_c_14 | Rep_1004_c_14_832 | 885919 | 887415 | - | 3.A.15.1.1 |
| TC | Rep_1004_c_14 | Rep_1004_c_14_833 | 887412 | 889379 | - | 1.B.22.1.1 |
Gene ID: Rep_1004_c_14_821
Type: CAZyme
Location: 877435 - 878865 (-)
Type: CAZyme
Location: 877435 - 878865 (-)
Gene ID: Rep_1004_c_14_822
Type: TC
Location: 879119 - 879481 (+)
Type: TC
Location: 879119 - 879481 (+)
Gene ID: Rep_1004_c_14_823
Type: TC
Location: 879478 - 880293 (-)
Type: TC
Location: 879478 - 880293 (-)
Gene ID: Rep_1004_c_14_824
Type: pfam
Location: 880330 - 880776 (-)
Type: pfam
Location: 880330 - 880776 (-)
Gene ID: Rep_1004_c_14_825
Type: pfam
Location: 880773 - 881861 (-)
Type: pfam
Location: 880773 - 881861 (-)
Gene ID: Rep_1004_c_14_826
Type: TC
Location: 881907 - 882809 (-)
Type: TC
Location: 881907 - 882809 (-)
Gene ID: Rep_1004_c_14_827
Type: TC
Location: 882806 - 883417 (-)
Type: TC
Location: 882806 - 883417 (-)
Gene ID: Rep_1004_c_14_828
Type: TC
Location: 883414 - 883791 (-)
Type: TC
Location: 883414 - 883791 (-)
Gene ID: Rep_1004_c_14_829
Type: TC
Location: 883775 - 884245 (-)
Type: TC
Location: 883775 - 884245 (-)
Gene ID: Rep_1004_c_14_830
Type: TC
Location: 884242 - 884715 (-)
Type: TC
Location: 884242 - 884715 (-)
Gene ID: Rep_1004_c_14_831
Type: TC
Location: 884718 - 885929 (-)
Type: TC
Location: 884718 - 885929 (-)
Gene ID: Rep_1004_c_14_832
Type: TC
Location: 885919 - 887415 (-)
Type: TC
Location: 885919 - 887415 (-)
Gene ID: Rep_1004_c_14_833
Type: TC
Location: 887412 - 889379 (-)
Type: TC
Location: 887412 - 889379 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia
Species
Serratia marcescens_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.