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Cluster: Rep_1004_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1004_c_14 Rep_1004_c_14_702 749260 751917 - GH20
pfam Rep_1004_c_14 Rep_1004_c_14_703 751931 752257 - YbfN
TC Rep_1004_c_14 Rep_1004_c_14_704 752305 753708 - 1.B.25.1.13
pfam Rep_1004_c_14 Rep_1004_c_14_705 754287 755951 - tRNA-synt_1c | tRNA-synt_1c_C | tRNA-synt_1c_C2
TC Rep_1004_c_14 Rep_1004_c_14_706 756192 758186 - 4.A.1.1.2
sulfatase Rep_1004_c_14 Rep_1004_c_14_707 758563 759363 + S1_9
CAZyme Rep_1004_c_14 Rep_1004_c_14_708 759382 760521 + CE9
TF Rep_1004_c_14 Rep_1004_c_14_709 760549 761769 + MarR
pfam Rep_1004_c_14 Rep_1004_c_14_710 761837 762589 + Hydrolase | Hydrolase_like | Hydrolase_6 | HAD_2
CAZyme Rep_1004_c_14 Rep_1004_c_14_711 762778 764226 + CBM12 | GH18
Gene ID: Rep_1004_c_14_702
Type: CAZyme
Location: 749260 - 751917 (-)
Gene ID: Rep_1004_c_14_703
Type: pfam
Location: 751931 - 752257 (-)
Gene ID: Rep_1004_c_14_704
Type: TC
Location: 752305 - 753708 (-)
Gene ID: Rep_1004_c_14_705
Type: pfam
Location: 754287 - 755951 (-)
Gene ID: Rep_1004_c_14_706
Type: TC
Location: 756192 - 758186 (-)
Gene ID: Rep_1004_c_14_707
Type: sulfatase
Location: 758563 - 759363 (+)
Gene ID: Rep_1004_c_14_708
Type: CAZyme
Location: 759382 - 760521 (+)
Gene ID: Rep_1004_c_14_709
Type: TF
Location: 760549 - 761769 (+)
Gene ID: Rep_1004_c_14_710
Type: pfam
Location: 761837 - 762589 (+)
Gene ID: Rep_1004_c_14_711
Type: CAZyme
Location: 762778 - 764226 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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