Cluster: Rep_1004_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1004
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1004_c_14 | Rep_1004_c_14_560 | 600137 | 602434 | - | GH3 |
| TF | Rep_1004_c_14 | Rep_1004_c_14_561 | 602547 | 603467 | - | HTH_1 |
| STP | Rep_1004_c_14 | Rep_1004_c_14_562 | 603586 | 604740 | + | Aminotran_1_2 |
| TC | Rep_1004_c_14 | Rep_1004_c_14_563 | 604775 | 605554 | + | 3.A.1.3.1 |
Gene ID: Rep_1004_c_14_560
Type: CAZyme
Location: 600137 - 602434 (-)
Type: CAZyme
Location: 600137 - 602434 (-)
Gene ID: Rep_1004_c_14_561
Type: TF
Location: 602547 - 603467 (-)
Type: TF
Location: 602547 - 603467 (-)
Gene ID: Rep_1004_c_14_562
Type: STP
Location: 603586 - 604740 (+)
Type: STP
Location: 603586 - 604740 (+)
Gene ID: Rep_1004_c_14_563
Type: TC
Location: 604775 - 605554 (+)
Type: TC
Location: 604775 - 605554 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia
Species
Serratia marcescens_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.