Cluster: Rep_1004_CGC12
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_1004
- CGC Family ID: CGCFAM_01371
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1004_c_14 | Rep_1004_c_14_323 | 347112 | 348488 | - | 3.A.1.110.6 |
| TC | Rep_1004_c_14 | Rep_1004_c_14_324 | 348491 | 349822 | - | 3.A.1.110.6 |
| TC | Rep_1004_c_14 | Rep_1004_c_14_325 | 349875 | 351524 | - | 3.A.1.110.6 |
| pfam | Rep_1004_c_14 | Rep_1004_c_14_326 | 352284 | 355274 | + | DUF4214 |
| CAZyme | Rep_1004_c_14 | Rep_1004_c_14_327 | 355481 | 356806 | - | GH39 |
| TC | Rep_1004_c_14 | Rep_1004_c_14_328 | 356905 | 358299 | - | 9.B.18.1.1 |
| pfam | Rep_1004_c_14 | Rep_1004_c_14_329 | 358427 | 359800 | - | PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| pfam | Rep_1004_c_14 | Rep_1004_c_14_330 | 359864 | 361279 | - | NTP_transferase | MannoseP_isomer | Cupin_2 | NTP_transf_3 | ManC_GMP_beta-helix |
| CAZyme | Rep_1004_c_14 | Rep_1004_c_14_331 | 361349 | 362413 | - | GT4 |
| CAZyme | Rep_1004_c_14 | Rep_1004_c_14_332 | 362410 | 363471 | - | GT4 |
| pfam | Rep_1004_c_14 | Rep_1004_c_14_333 | 363503 | 364837 | - | Wzy_C |
| CAZyme | Rep_1004_c_14 | Rep_1004_c_14_334 | 364837 | 365976 | - | GT4 |
Gene ID: Rep_1004_c_14_323
Type: TC
Location: 347112 - 348488 (-)
Type: TC
Location: 347112 - 348488 (-)
Gene ID: Rep_1004_c_14_324
Type: TC
Location: 348491 - 349822 (-)
Type: TC
Location: 348491 - 349822 (-)
Gene ID: Rep_1004_c_14_325
Type: TC
Location: 349875 - 351524 (-)
Type: TC
Location: 349875 - 351524 (-)
Gene ID: Rep_1004_c_14_326
Type: pfam
Location: 352284 - 355274 (+)
Type: pfam
Location: 352284 - 355274 (+)
Gene ID: Rep_1004_c_14_327
Type: CAZyme
Location: 355481 - 356806 (-)
Type: CAZyme
Location: 355481 - 356806 (-)
Gene ID: Rep_1004_c_14_328
Type: TC
Location: 356905 - 358299 (-)
Type: TC
Location: 356905 - 358299 (-)
Gene ID: Rep_1004_c_14_329
Type: pfam
Location: 358427 - 359800 (-)
Type: pfam
Location: 358427 - 359800 (-)
Gene ID: Rep_1004_c_14_330
Type: pfam
Location: 359864 - 361279 (-)
Type: pfam
Location: 359864 - 361279 (-)
Gene ID: Rep_1004_c_14_331
Type: CAZyme
Location: 361349 - 362413 (-)
Type: CAZyme
Location: 361349 - 362413 (-)
Gene ID: Rep_1004_c_14_332
Type: CAZyme
Location: 362410 - 363471 (-)
Type: CAZyme
Location: 362410 - 363471 (-)
Gene ID: Rep_1004_c_14_333
Type: pfam
Location: 363503 - 364837 (-)
Type: pfam
Location: 363503 - 364837 (-)
Gene ID: Rep_1004_c_14_334
Type: CAZyme
Location: 364837 - 365976 (-)
Type: CAZyme
Location: 364837 - 365976 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia
Species
Serratia marcescens_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.