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Cluster: Rep_1004_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1004_c_14 Rep_1004_c_14_313 335710 336492 - GT2
CAZyme Rep_1004_c_14 Rep_1004_c_14_314 336500 337405 - GT2
CAZyme Rep_1004_c_14 Rep_1004_c_14_315 337406 338650 - GT4
pfam Rep_1004_c_14 Rep_1004_c_14_316 338650 340614 - Hydrolase
pfam Rep_1004_c_14 Rep_1004_c_14_317 340639 341613 - Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
TC Rep_1004_c_14 Rep_1004_c_14_318 341616 342833 - 3.A.1.103.6
TC Rep_1004_c_14 Rep_1004_c_14_319 342823 343602 - 3.A.1.103.6
Gene ID: Rep_1004_c_14_313
Type: CAZyme
Location: 335710 - 336492 (-)
Gene ID: Rep_1004_c_14_314
Type: CAZyme
Location: 336500 - 337405 (-)
Gene ID: Rep_1004_c_14_315
Type: CAZyme
Location: 337406 - 338650 (-)
Gene ID: Rep_1004_c_14_316
Type: pfam
Location: 338650 - 340614 (-)
Gene ID: Rep_1004_c_14_317
Type: pfam
Location: 340639 - 341613 (-)
Gene ID: Rep_1004_c_14_318
Type: TC
Location: 341616 - 342833 (-)
Gene ID: Rep_1004_c_14_319
Type: TC
Location: 342823 - 343602 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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