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Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_960 RavehSadkaT_2016_SRR6257474_bin.5_k119_960_140 161479 163812 + GH2
pfam RavehSadkaT_2016_SRR6257474_bin.5_k119_960 RavehSadkaT_2016_SRR6257474_bin.5_k119_960_141 163886 164575 - DUF624
TF RavehSadkaT_2016_SRR6257474_bin.5_k119_960 RavehSadkaT_2016_SRR6257474_bin.5_k119_960_142 164791 165831 + LacI
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_960 RavehSadkaT_2016_SRR6257474_bin.5_k119_960_143 165993 166979 + 3.A.1.1.10
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_960 RavehSadkaT_2016_SRR6257474_bin.5_k119_960_144 166997 167887 + 3.A.1.1.29
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_960_140
Type: CAZyme
Location: 161479 - 163812 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_960_141
Type: pfam
Location: 163886 - 164575 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_960_142
Type: TF
Location: 164791 - 165831 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_960_143
Type: TC
Location: 165993 - 166979 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_960_144
Type: TC
Location: 166997 - 167887 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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