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Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC55

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_5244 RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_25 25057 26349 - 9.A.40.2.1
NULL(UNKNOWN) RavehSadkaT_2016_SRR6257474_bin.5_k119_5244 RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_26 26621 27445 + NULL(UNKNOWN)
[View Structural Homologs]
pfam RavehSadkaT_2016_SRR6257474_bin.5_k119_5244 RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_27 27569 28540 - LytR_cpsA_psr
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_5244 RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_28 28779 30263 + 9.B.142.3.7
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_5244 RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_29 30229 31173 + GT2
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_25
Type: TC
Location: 25057 - 26349 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_26
Type:
Location: 26621 - 27445 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_27
Type: pfam
Location: 27569 - 28540 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_28
Type: TC
Location: 28779 - 30263 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_29
Type: CAZyme
Location: 30229 - 31173 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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