Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC52
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: RavehSadkaT_2016_SRR6257474_bin.5
- CGC Family ID: CGCFAM_01781
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_4970 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4970_26 | 28146 | 29561 | - | 9.A.11.1.1 |
| pfam | RavehSadkaT_2016_SRR6257474_bin.5_k119_4970 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4970_27 | 29748 | 30335 | + | ECF-ribofla_trS | ECF_trnsprt |
| TF | RavehSadkaT_2016_SRR6257474_bin.5_k119_4970 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4970_28 | 30502 | 31332 | - | HTH_AraC | HTH_AraC |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_4970 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4970_29 | 31443 | 33428 | + | GH127 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_4970 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4970_30 | 33615 | 35021 | + | 2.A.66.1.33 |
| TF | RavehSadkaT_2016_SRR6257474_bin.5_k119_4970 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4970_31 | 35208 | 36221 | + | LacI |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_4970 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4970_32 | 36399 | 38465 | + | GH36 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_4970 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4970_33 | 38764 | 40143 | + | 2.A.2.1.1 |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_4970 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4970_34 | 40296 | 42248 | + | GH42 |
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4970_26
Type: TC
Location: 28146 - 29561 (-)
Type: TC
Location: 28146 - 29561 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4970_27
Type: pfam
Location: 29748 - 30335 (+)
Type: pfam
Location: 29748 - 30335 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4970_28
Type: TF
Location: 30502 - 31332 (-)
Type: TF
Location: 30502 - 31332 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4970_29
Type: CAZyme
Location: 31443 - 33428 (+)
Type: CAZyme
Location: 31443 - 33428 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4970_30
Type: TC
Location: 33615 - 35021 (+)
Type: TC
Location: 33615 - 35021 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4970_31
Type: TF
Location: 35208 - 36221 (+)
Type: TF
Location: 35208 - 36221 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4970_32
Type: CAZyme
Location: 36399 - 38465 (+)
Type: CAZyme
Location: 36399 - 38465 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4970_33
Type: TC
Location: 38764 - 40143 (+)
Type: TC
Location: 38764 - 40143 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4970_34
Type: CAZyme
Location: 40296 - 42248 (+)
Type: CAZyme
Location: 40296 - 42248 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900547475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.