Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC50
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: RavehSadkaT_2016_SRR6257474_bin.5
- CGC Family ID: CGCFAM_03840
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_43 | 52589 | 53413 | - | 1.A.23.2.1 |
| pfam | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_44 | 53528 | 53755 | - | Imp-YgjV |
| pfam | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_45 | 53983 | 55728 | + | Sulfatase |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_46 | 55859 | 56803 | - | GH43_26 |
| TF | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_47 | 56845 | 57777 | - | HTH_5 |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_48 | 57912 | 59429 | - | GH51_1 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_49 | 59464 | 60357 | - | 3.A.1.1.34 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_50 | 60361 | 61251 | - | 3.A.1.1.34 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_51 | 61324 | 62718 | - | 3.A.1.1.34 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_52 | 63178 | 64020 | - | 3.A.1.132.3 |
| pfam | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_53 | 64165 | 64596 | - | GGACT |
| peptidase | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_54 | 64598 | 65239 | - | C15.001 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_55 | 65376 | 66305 | - | 9.B.211.1.2 |
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_43
Type: TC
Location: 52589 - 53413 (-)
Type: TC
Location: 52589 - 53413 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_44
Type: pfam
Location: 53528 - 53755 (-)
Type: pfam
Location: 53528 - 53755 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_45
Type: pfam
Location: 53983 - 55728 (+)
Type: pfam
Location: 53983 - 55728 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_46
Type: CAZyme
Location: 55859 - 56803 (-)
Type: CAZyme
Location: 55859 - 56803 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_47
Type: TF
Location: 56845 - 57777 (-)
Type: TF
Location: 56845 - 57777 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_48
Type: CAZyme
Location: 57912 - 59429 (-)
Type: CAZyme
Location: 57912 - 59429 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_49
Type: TC
Location: 59464 - 60357 (-)
Type: TC
Location: 59464 - 60357 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_50
Type: TC
Location: 60361 - 61251 (-)
Type: TC
Location: 60361 - 61251 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_51
Type: TC
Location: 61324 - 62718 (-)
Type: TC
Location: 61324 - 62718 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_52
Type: TC
Location: 63178 - 64020 (-)
Type: TC
Location: 63178 - 64020 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_53
Type: pfam
Location: 64165 - 64596 (-)
Type: pfam
Location: 64165 - 64596 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_54
Type: peptidase
Location: 64598 - 65239 (-)
Type: peptidase
Location: 64598 - 65239 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_55
Type: TC
Location: 65376 - 66305 (-)
Type: TC
Location: 65376 - 66305 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900547475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.