Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC49
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate:
- Genome ID: RavehSadkaT_2016_SRR6257474_bin.5
- CGC Family ID: CGCFAM_08690
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_13 | 9532 | 10350 | - | 2.A.5.5.2 |
| pfam | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_14 | 10735 | 11274 | - | DNA_binding_1 | Methyltransf_1N |
| NULL(UNKNOWN) | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_15 | 11385 | 11645 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_16 | 11711 | 15670 | - | GH29 |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_17 | 15788 | 20788 | - | CBM32 | CBM40 | CBM40 | GH33 |
| peptidase | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_18 | 21020 | 21880 | + | S66.UPW |
| TF | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_19 | 22006 | 22380 | + | GntR |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_20 | 22383 | 23234 | + | 3.A.1.149.1 |
| pfam | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_21 | 23238 | 23873 | + | ABC2_membrane_5 |
| TF | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_22 | 23912 | 25459 | - | HTH_AraC | HTH_AraC |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_23 | 25453 | 27243 | - | 8.A.59.2.1 |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_24 | 27423 | 29744 | - | GH95 |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_25 | 29756 | 31891 | - | GH3 |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_26 | 32089 | 34422 | - | GH31_3 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_27 | 34623 | 36299 | - | 3.A.1.1.29 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_28 | 36376 | 37260 | - | 3.A.1.1.29 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_29 | 37316 | 38302 | - | 3.A.1.1.29 |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484 | RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_30 | 38552 | 41305 | + | GH3 |
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_13
Type: TC
Location: 9532 - 10350 (-)
Type: TC
Location: 9532 - 10350 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_14
Type: pfam
Location: 10735 - 11274 (-)
Type: pfam
Location: 10735 - 11274 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_15
Type:
Location: 11385 - 11645 (+)
Type:
Location: 11385 - 11645 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_16
Type: CAZyme
Location: 11711 - 15670 (-)
Type: CAZyme
Location: 11711 - 15670 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_17
Type: CAZyme
Location: 15788 - 20788 (-)
Type: CAZyme
Location: 15788 - 20788 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_18
Type: peptidase
Location: 21020 - 21880 (+)
Type: peptidase
Location: 21020 - 21880 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_19
Type: TF
Location: 22006 - 22380 (+)
Type: TF
Location: 22006 - 22380 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_20
Type: TC
Location: 22383 - 23234 (+)
Type: TC
Location: 22383 - 23234 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_21
Type: pfam
Location: 23238 - 23873 (+)
Type: pfam
Location: 23238 - 23873 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_22
Type: TF
Location: 23912 - 25459 (-)
Type: TF
Location: 23912 - 25459 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_23
Type: TC
Location: 25453 - 27243 (-)
Type: TC
Location: 25453 - 27243 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_24
Type: CAZyme
Location: 27423 - 29744 (-)
Type: CAZyme
Location: 27423 - 29744 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_25
Type: CAZyme
Location: 29756 - 31891 (-)
Type: CAZyme
Location: 29756 - 31891 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_26
Type: CAZyme
Location: 32089 - 34422 (-)
Type: CAZyme
Location: 32089 - 34422 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_27
Type: TC
Location: 34623 - 36299 (-)
Type: TC
Location: 34623 - 36299 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_28
Type: TC
Location: 36376 - 37260 (-)
Type: TC
Location: 36376 - 37260 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_29
Type: TC
Location: 37316 - 38302 (-)
Type: TC
Location: 37316 - 38302 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_4484_30
Type: CAZyme
Location: 38552 - 41305 (+)
Type: CAZyme
Location: 38552 - 41305 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900547475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.