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Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_3978 RavehSadkaT_2016_SRR6257474_bin.5_k119_3978_26 23326 24954 - GH13_31
pfam RavehSadkaT_2016_SRR6257474_bin.5_k119_3978 RavehSadkaT_2016_SRR6257474_bin.5_k119_3978_27 25083 25541 - DUF1905 | OmdA
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_3978 RavehSadkaT_2016_SRR6257474_bin.5_k119_3978_28 25599 26465 - 2.A.7.2.1
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_3978 RavehSadkaT_2016_SRR6257474_bin.5_k119_3978_29 26593 28524 - 4.A.2.1.4
STP RavehSadkaT_2016_SRR6257474_bin.5_k119_3978 RavehSadkaT_2016_SRR6257474_bin.5_k119_3978_30 28548 29453 - PfkB
TF RavehSadkaT_2016_SRR6257474_bin.5_k119_3978 RavehSadkaT_2016_SRR6257474_bin.5_k119_3978_31 29453 30205 - HTH_DeoR
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_3978 RavehSadkaT_2016_SRR6257474_bin.5_k119_3978_32 30515 31876 + 2.A.66.1.32
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_3978_26
Type: CAZyme
Location: 23326 - 24954 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_3978_27
Type: pfam
Location: 25083 - 25541 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_3978_28
Type: TC
Location: 25599 - 26465 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_3978_29
Type: TC
Location: 26593 - 28524 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_3978_30
Type: STP
Location: 28548 - 29453 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_3978_31
Type: TF
Location: 29453 - 30205 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_3978_32
Type: TC
Location: 30515 - 31876 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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