Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC37
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: RavehSadkaT_2016_SRR6257474_bin.5
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491 | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_53 | 61340 | 62107 | + | 3.A.1.134.12 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491 | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_54 | 62097 | 64145 | + | 3.A.1.134.4 |
| pfam | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491 | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_55 | 64466 | 65761 | + | tRNA-synt_2b | HGTP_anticodon | tRNA-synt_His |
| TF | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491 | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_56 | 65883 | 66863 | + | LacI |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491 | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_57 | 67056 | 68486 | + | 4.A.1.2.8 |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491 | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_58 | 68600 | 70078 | + | GH32 |
| pfam | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491 | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_59 | 70237 | 71679 | + | Rieske | FAD_binding_2 | DAO | FAD_binding_3 | NAD_binding_8 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491 | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_60 | 71800 | 73725 | + | 2.A.67.4.2 |
| NULL(UNKNOWN) | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491 | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_61 | 73715 | 74059 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491 | RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_62 | 74223 | 75587 | + | 2.A.66.1.33 |
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_53
Type: TC
Location: 61340 - 62107 (+)
Type: TC
Location: 61340 - 62107 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_54
Type: TC
Location: 62097 - 64145 (+)
Type: TC
Location: 62097 - 64145 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_55
Type: pfam
Location: 64466 - 65761 (+)
Type: pfam
Location: 64466 - 65761 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_56
Type: TF
Location: 65883 - 66863 (+)
Type: TF
Location: 65883 - 66863 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_57
Type: TC
Location: 67056 - 68486 (+)
Type: TC
Location: 67056 - 68486 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_58
Type: CAZyme
Location: 68600 - 70078 (+)
Type: CAZyme
Location: 68600 - 70078 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_59
Type: pfam
Location: 70237 - 71679 (+)
Type: pfam
Location: 70237 - 71679 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_60
Type: TC
Location: 71800 - 73725 (+)
Type: TC
Location: 71800 - 73725 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_61
Type:
Location: 73715 - 74059 (+)
Type:
Location: 73715 - 74059 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_3491_62
Type: TC
Location: 74223 - 75587 (+)
Type: TC
Location: 74223 - 75587 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900547475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.