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Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_2935 RavehSadkaT_2016_SRR6257474_bin.5_k119_2935_38 37104 39317 + GH36
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_2935 RavehSadkaT_2016_SRR6257474_bin.5_k119_2935_39 39532 40899 + 2.A.2.3.2
TF RavehSadkaT_2016_SRR6257474_bin.5_k119_2935 RavehSadkaT_2016_SRR6257474_bin.5_k119_2935_40 40952 41809 - HTH_AraC | HTH_AraC
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_2935 RavehSadkaT_2016_SRR6257474_bin.5_k119_2935_41 42221 43474 + 3.A.1.1.28
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_2935 RavehSadkaT_2016_SRR6257474_bin.5_k119_2935_42 43494 44357 + 3.A.1.1.42
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_2935 RavehSadkaT_2016_SRR6257474_bin.5_k119_2935_43 44357 45241 + 3.A.1.1.28
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2935_38
Type: CAZyme
Location: 37104 - 39317 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2935_39
Type: TC
Location: 39532 - 40899 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2935_40
Type: TF
Location: 40952 - 41809 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2935_41
Type: TC
Location: 42221 - 43474 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2935_42
Type: TC
Location: 43494 - 44357 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2935_43
Type: TC
Location: 44357 - 45241 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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