Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC30
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 5
- Substrate:
- Genome ID: RavehSadkaT_2016_SRR6257474_bin.5
- CGC Family ID: CGCFAM_04139
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_2388 | RavehSadkaT_2016_SRR6257474_bin.5_k119_2388_2 | 1322 | 2950 | + | GH13_31 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_2388 | RavehSadkaT_2016_SRR6257474_bin.5_k119_2388_3 | 3214 | 4632 | + | 4.A.1.2.13 |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_2388 | RavehSadkaT_2016_SRR6257474_bin.5_k119_2388_4 | 4672 | 6336 | + | GH13_29 |
| TF | RavehSadkaT_2016_SRR6257474_bin.5_k119_2388 | RavehSadkaT_2016_SRR6257474_bin.5_k119_2388_5 | 6464 | 7168 | + | GntR |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_2388 | RavehSadkaT_2016_SRR6257474_bin.5_k119_2388_6 | 7193 | 8482 | + | GH125 |
| TF | RavehSadkaT_2016_SRR6257474_bin.5_k119_2388 | RavehSadkaT_2016_SRR6257474_bin.5_k119_2388_7 | 8687 | 9571 | - | HTH_AraC | HTH_AraC |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_2388 | RavehSadkaT_2016_SRR6257474_bin.5_k119_2388_8 | 9723 | 11357 | + | GH13_31 |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_2388 | RavehSadkaT_2016_SRR6257474_bin.5_k119_2388_9 | 11507 | 13741 | + | GH36 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_2388 | RavehSadkaT_2016_SRR6257474_bin.5_k119_2388_10 | 13782 | 15227 | + | 4.A.1.2.8 |
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2388_2
Type: CAZyme
Location: 1322 - 2950 (+)
Type: CAZyme
Location: 1322 - 2950 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2388_3
Type: TC
Location: 3214 - 4632 (+)
Type: TC
Location: 3214 - 4632 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2388_4
Type: CAZyme
Location: 4672 - 6336 (+)
Type: CAZyme
Location: 4672 - 6336 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2388_5
Type: TF
Location: 6464 - 7168 (+)
Type: TF
Location: 6464 - 7168 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2388_6
Type: CAZyme
Location: 7193 - 8482 (+)
Type: CAZyme
Location: 7193 - 8482 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2388_7
Type: TF
Location: 8687 - 9571 (-)
Type: TF
Location: 8687 - 9571 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2388_8
Type: CAZyme
Location: 9723 - 11357 (+)
Type: CAZyme
Location: 9723 - 11357 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2388_9
Type: CAZyme
Location: 11507 - 13741 (+)
Type: CAZyme
Location: 11507 - 13741 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2388_10
Type: TC
Location: 13782 - 15227 (+)
Type: TC
Location: 13782 - 15227 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900547475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.