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Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_69 79770 81860 + 3.A.16.1.1
pfam RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_70 81973 84066 + UvrD-helicase | AAA_19
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_71 84413 84718 + 4.A.3.2.8
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_72 84741 86117 + 4.A.3.2.8
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_73 86369 87673 + GH4
pfam RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_74 87737 88471 + YdjC
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_75 88484 88810 + 4.A.3.2.2
TF RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_76 89020 89724 + GntR
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_77 90202 91644 + 2.A.118.1.8
peptidase RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_78 91778 92911 + M20.UND
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_79 93319 96813 + GH84
pfam RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_80 96909 97991 - NPHP3_N
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_81 98234 99076 + 3.A.1.3.27
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_82 99225 99905 + 3.A.1.3.15
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_83 99892 100614 + 3.A.1.3.25
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_84 100686 101996 - GH125
pfam RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_85 102370 103044 - DUF624
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_86 103165 104907 + 8.A.59.2.1
TF RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_87 104910 106007 + HTH_AraC | HTH_AraC
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_88 106236 107246 + 3.A.1.1.10
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_89 107266 108225 + 3.A.1.1.29
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_90 108306 111437 + GH38
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_791 RavehSadkaT_2016_SRR6257474_bin.5_k119_791_91 111634 114429 + CBM32 | GH85
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_69
Type: TC
Location: 79770 - 81860 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_70
Type: pfam
Location: 81973 - 84066 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_71
Type: TC
Location: 84413 - 84718 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_72
Type: TC
Location: 84741 - 86117 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_73
Type: CAZyme
Location: 86369 - 87673 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_74
Type: pfam
Location: 87737 - 88471 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_75
Type: TC
Location: 88484 - 88810 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_76
Type: TF
Location: 89020 - 89724 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_77
Type: TC
Location: 90202 - 91644 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_78
Type: peptidase
Location: 91778 - 92911 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_79
Type: CAZyme
Location: 93319 - 96813 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_80
Type: pfam
Location: 96909 - 97991 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_81
Type: TC
Location: 98234 - 99076 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_82
Type: TC
Location: 99225 - 99905 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_83
Type: TC
Location: 99892 - 100614 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_84
Type: CAZyme
Location: 100686 - 101996 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_85
Type: pfam
Location: 102370 - 103044 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_86
Type: TC
Location: 103165 - 104907 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_87
Type: TF
Location: 104910 - 106007 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_88
Type: TC
Location: 106236 - 107246 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_89
Type: TC
Location: 107266 - 108225 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_90
Type: CAZyme
Location: 108306 - 111437 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_91
Type: CAZyme
Location: 111634 - 114429 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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