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Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_2159 RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_2 757 1617 - 1.A.8.2.1
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_2159 RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_3 1738 3177 - GH1
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_2159 RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_4 3216 5108 - 4.A.1.2.2
TF RavehSadkaT_2016_SRR6257474_bin.5_k119_2159 RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_5 5281 5988 + GntR
NULL(UNKNOWN) RavehSadkaT_2016_SRR6257474_bin.5_k119_2159 RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_6 6045 6206 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_2159 RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_7 6254 9028 - GH3
TF RavehSadkaT_2016_SRR6257474_bin.5_k119_2159 RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_8 9208 9975 + HTH_AraC | HTH_AraC
STP RavehSadkaT_2016_SRR6257474_bin.5_k119_2159 RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_9 10095 11051 + PfkB
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_2159 RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_10 11074 12537 + GH13_18
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_2159 RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_11 12720 14204 - GH32
STP RavehSadkaT_2016_SRR6257474_bin.5_k119_2159 RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_12 14315 15256 - PfkB
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_2159 RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_13 15284 16753 - GH32
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_2159 RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_14 16844 18439 - 3.A.1.1.10
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_2159 RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_15 18459 19355 - 3.A.1.1.29
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_2159 RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_16 19368 20417 - 3.A.1.1.10
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_2
Type: TC
Location: 757 - 1617 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_3
Type: CAZyme
Location: 1738 - 3177 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_4
Type: TC
Location: 3216 - 5108 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_5
Type: TF
Location: 5281 - 5988 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_6
Type:
Location: 6045 - 6206 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_7
Type: CAZyme
Location: 6254 - 9028 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_8
Type: TF
Location: 9208 - 9975 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_9
Type: STP
Location: 10095 - 11051 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_10
Type: CAZyme
Location: 11074 - 12537 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_11
Type: CAZyme
Location: 12720 - 14204 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_12
Type: STP
Location: 14315 - 15256 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_13
Type: CAZyme
Location: 15284 - 16753 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_14
Type: TC
Location: 16844 - 18439 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_15
Type: TC
Location: 18459 - 19355 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_2159_16
Type: TC
Location: 19368 - 20417 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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