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Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_17 16014 16940 + 3.A.1.1.36
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_18 16960 17790 + 3.A.1.1.34
pfam RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_19 17815 18729 + DHDPS
pfam RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_20 18818 19699 + ROK
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_21 19815 21104 + 2.A.40.1.1
pfam RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_22 21336 21902 + Flavodoxin_2 | FMN_red
NULL(UNKNOWN) RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_23 22071 23720 - NULL(UNKNOWN)
[View Structural Homologs]
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_24 23725 24510 - 3.A.1.128.6
pfam RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_25 24758 25267 + Ferritin
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_26 25387 26577 - 2.A.1.7.6
TF RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_27 26685 27572 + HTH_AraC | HTH_AraC
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_28 27986 29467 + 2.A.39.3.14
STP RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_29 29888 31138 + HATPase_c
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_30 31396 35280 + CBM32 | GH84
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_31 35458 36546 + 9.A.28.1.1
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_32 36749 37894 + 2.A.86.1.8
pfam RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_33 38033 39319 - MFS_1 | MFS_1 | ATG22
NULL(UNKNOWN) RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_34 39517 39672 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_35 40076 42856 + GH2
TF RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_36 43100 43777 + Trans_reg_C
STP RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_37 43767 44819 + HATPase_c | HisKA
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_38 45012 46817 + 3.A.1.135.6
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_39 46817 48577 + 3.A.1.135.6
pfam RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_40 48784 49353 + Ribosomal_L25p | Ribosomal_TL5_C
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_1474 RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_41 49565 50875 + 2.A.66.1.7
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_17
Type: TC
Location: 16014 - 16940 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_18
Type: TC
Location: 16960 - 17790 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_19
Type: pfam
Location: 17815 - 18729 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_20
Type: pfam
Location: 18818 - 19699 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_21
Type: TC
Location: 19815 - 21104 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_22
Type: pfam
Location: 21336 - 21902 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_23
Type:
Location: 22071 - 23720 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_24
Type: TC
Location: 23725 - 24510 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_25
Type: pfam
Location: 24758 - 25267 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_26
Type: TC
Location: 25387 - 26577 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_27
Type: TF
Location: 26685 - 27572 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_28
Type: TC
Location: 27986 - 29467 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_29
Type: STP
Location: 29888 - 31138 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_30
Type: CAZyme
Location: 31396 - 35280 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_31
Type: TC
Location: 35458 - 36546 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_32
Type: TC
Location: 36749 - 37894 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_33
Type: pfam
Location: 38033 - 39319 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_34
Type:
Location: 39517 - 39672 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_35
Type: CAZyme
Location: 40076 - 42856 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_36
Type: TF
Location: 43100 - 43777 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_37
Type: STP
Location: 43767 - 44819 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_38
Type: TC
Location: 45012 - 46817 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_39
Type: TC
Location: 46817 - 48577 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_40
Type: pfam
Location: 48784 - 49353 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1474_41
Type: TC
Location: 49565 - 50875 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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