Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: RavehSadkaT_2016_SRR6257474_bin.5
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_791 | RavehSadkaT_2016_SRR6257474_bin.5_k119_791_43 | 41539 | 42927 | + | 2.A.2.3.3 |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_791 | RavehSadkaT_2016_SRR6257474_bin.5_k119_791_44 | 43001 | 44770 | + | GH3 |
| pfam | RavehSadkaT_2016_SRR6257474_bin.5_k119_791 | RavehSadkaT_2016_SRR6257474_bin.5_k119_791_45 | 45042 | 47867 | + | UvrA_DNA-bind | UvrA_inter |
| STP | RavehSadkaT_2016_SRR6257474_bin.5_k119_791 | RavehSadkaT_2016_SRR6257474_bin.5_k119_791_46 | 47941 | 48390 | + | FHA |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_791 | RavehSadkaT_2016_SRR6257474_bin.5_k119_791_47 | 48477 | 49700 | + | 2.A.103.1.3 |
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_43
Type: TC
Location: 41539 - 42927 (+)
Type: TC
Location: 41539 - 42927 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_44
Type: CAZyme
Location: 43001 - 44770 (+)
Type: CAZyme
Location: 43001 - 44770 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_45
Type: pfam
Location: 45042 - 47867 (+)
Type: pfam
Location: 45042 - 47867 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_46
Type: STP
Location: 47941 - 48390 (+)
Type: STP
Location: 47941 - 48390 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_791_47
Type: TC
Location: 48477 - 49700 (+)
Type: TC
Location: 48477 - 49700 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900547475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.