Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC18
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate: beta-mannan
- Genome ID: RavehSadkaT_2016_SRR6257474_bin.5
- CGC Family ID: CGCFAM_01490
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_2 | 2268 | 3242 | + | 3.A.1.5.9 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_3 | 3246 | 4154 | + | 3.A.1.5.9 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_4 | 4169 | 5212 | + | 3.A.1.5.9 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_5 | 5214 | 6224 | + | 3.A.1.5.20 |
| NULL(UNKNOWN) | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_6 | 6170 | 6442 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_7 | 6508 | 6705 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_8 | 6780 | 8546 | - | 8.A.59.2.1 |
| TF | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_9 | 8824 | 10068 | + | HTH_AraC | HTH_AraC |
| STP | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_10 | 10105 | 11400 | + | SBP_bac_1 |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_11 | 11582 | 13768 | + | GH36 |
| pfam | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_12 | 13837 | 14013 | + | SpoOE-like |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_13 | 14211 | 17660 | + | CBM23 | CBM27 | GH26 |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_14 | 17875 | 20808 | + | CBM23 | CBM27 | GH26 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_15 | 20907 | 22673 | - | 8.A.59.2.1 |
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_2
Type: TC
Location: 2268 - 3242 (+)
Type: TC
Location: 2268 - 3242 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_3
Type: TC
Location: 3246 - 4154 (+)
Type: TC
Location: 3246 - 4154 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_4
Type: TC
Location: 4169 - 5212 (+)
Type: TC
Location: 4169 - 5212 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_5
Type: TC
Location: 5214 - 6224 (+)
Type: TC
Location: 5214 - 6224 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_6
Type:
Location: 6170 - 6442 (+)
Type:
Location: 6170 - 6442 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_7
Type:
Location: 6508 - 6705 (+)
Type:
Location: 6508 - 6705 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_8
Type: TC
Location: 6780 - 8546 (-)
Type: TC
Location: 6780 - 8546 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_9
Type: TF
Location: 8824 - 10068 (+)
Type: TF
Location: 8824 - 10068 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_10
Type: STP
Location: 10105 - 11400 (+)
Type: STP
Location: 10105 - 11400 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_11
Type: CAZyme
Location: 11582 - 13768 (+)
Type: CAZyme
Location: 11582 - 13768 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_12
Type: pfam
Location: 13837 - 14013 (+)
Type: pfam
Location: 13837 - 14013 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_13
Type: CAZyme
Location: 14211 - 17660 (+)
Type: CAZyme
Location: 14211 - 17660 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_14
Type: CAZyme
Location: 17875 - 20808 (+)
Type: CAZyme
Location: 17875 - 20808 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_15
Type: TC
Location: 20907 - 22673 (-)
Type: TC
Location: 20907 - 22673 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900547475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.