Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC15
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: RavehSadkaT_2016_SRR6257474_bin.5
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_1222 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1222_34 | 34833 | 36899 | - | GH39 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1222 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1222_35 | 37102 | 39702 | + | 3.A.9.1.2 |
| pfam | RavehSadkaT_2016_SRR6257474_bin.5_k119_1222 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1222_36 | 39773 | 40954 | - | Sugar_tr | MFS_1 | MFS_1 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1222 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1222_37 | 41182 | 42099 | - | 8.A.5.1.7 |
| TF | RavehSadkaT_2016_SRR6257474_bin.5_k119_1222 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1222_38 | 43160 | 44029 | - | HTH_AraC | HTH_AraC |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1222 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1222_39 | 44228 | 45121 | + | 3.A.1.1.20 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1222 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1222_40 | 45134 | 46069 | + | 3.A.1.1.18 |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_1222 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1222_41 | 46082 | 48241 | + | GH112 |
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1222_34
Type: CAZyme
Location: 34833 - 36899 (-)
Type: CAZyme
Location: 34833 - 36899 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1222_35
Type: TC
Location: 37102 - 39702 (+)
Type: TC
Location: 37102 - 39702 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1222_36
Type: pfam
Location: 39773 - 40954 (-)
Type: pfam
Location: 39773 - 40954 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1222_37
Type: TC
Location: 41182 - 42099 (-)
Type: TC
Location: 41182 - 42099 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1222_38
Type: TF
Location: 43160 - 44029 (-)
Type: TF
Location: 43160 - 44029 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1222_39
Type: TC
Location: 44228 - 45121 (+)
Type: TC
Location: 44228 - 45121 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1222_40
Type: TC
Location: 45134 - 46069 (+)
Type: TC
Location: 45134 - 46069 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1222_41
Type: CAZyme
Location: 46082 - 48241 (+)
Type: CAZyme
Location: 46082 - 48241 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900547475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.