Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC13
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: RavehSadkaT_2016_SRR6257474_bin.5
- CGC Family ID: CGCFAM_01247
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_35 | 40944 | 41654 | + | 2.A.115.2.3 |
| pfam | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_36 | 41780 | 42691 | + | PRD | PRD | CAT_RBD |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_37 | 42819 | 44699 | + | 4.A.1.2.11 |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_38 | 44721 | 46160 | + | GH1 |
| pfam | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_39 | 46461 | 47321 | + | Hydrolase | S6PP | S6PP | Hydrolase_3 |
| NULL(UNKNOWN) | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_40 | 47452 | 47544 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_41 | 47632 | 48411 | - | 2.A.5.5.5 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_42 | 48555 | 49262 | + | 9.B.116.3.1 |
| STP | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_43 | 49541 | 50875 | + | Pyr_redox_2 |
| pfam | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_44 | 51118 | 52620 | + | DUF1846 | DUF1846_C |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_45 | 52771 | 54090 | + | GH25 |
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_35
Type: TC
Location: 40944 - 41654 (+)
Type: TC
Location: 40944 - 41654 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_36
Type: pfam
Location: 41780 - 42691 (+)
Type: pfam
Location: 41780 - 42691 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_37
Type: TC
Location: 42819 - 44699 (+)
Type: TC
Location: 42819 - 44699 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_38
Type: CAZyme
Location: 44721 - 46160 (+)
Type: CAZyme
Location: 44721 - 46160 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_39
Type: pfam
Location: 46461 - 47321 (+)
Type: pfam
Location: 46461 - 47321 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_40
Type:
Location: 47452 - 47544 (-)
Type:
Location: 47452 - 47544 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_41
Type: TC
Location: 47632 - 48411 (-)
Type: TC
Location: 47632 - 48411 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_42
Type: TC
Location: 48555 - 49262 (+)
Type: TC
Location: 48555 - 49262 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_43
Type: STP
Location: 49541 - 50875 (+)
Type: STP
Location: 49541 - 50875 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_44
Type: pfam
Location: 51118 - 52620 (+)
Type: pfam
Location: 51118 - 52620 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_45
Type: CAZyme
Location: 52771 - 54090 (+)
Type: CAZyme
Location: 52771 - 54090 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900547475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.