Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: RavehSadkaT_2016_SRR6257474_bin.5
- CGC Family ID: CGCFAM_09810
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_17 | 22030 | 23451 | + | 4.A.1.2.9 |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_18 | 23473 | 24951 | + | GH32 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_19 | 25395 | 26591 | + | 2.A.1.15.13 |
| TF | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_20 | 26746 | 27105 | - | Fe_dep_repress |
| TF | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_21 | 27124 | 27918 | - | HTH_AraC |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_22 | 28077 | 29210 | + | 3.A.1.14.9 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_23 | 29229 | 30002 | + | 3.A.1.14.7 |
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_17
Type: TC
Location: 22030 - 23451 (+)
Type: TC
Location: 22030 - 23451 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_18
Type: CAZyme
Location: 23473 - 24951 (+)
Type: CAZyme
Location: 23473 - 24951 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_19
Type: TC
Location: 25395 - 26591 (+)
Type: TC
Location: 25395 - 26591 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_20
Type: TF
Location: 26746 - 27105 (-)
Type: TF
Location: 26746 - 27105 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_21
Type: TF
Location: 27124 - 27918 (-)
Type: TF
Location: 27124 - 27918 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_22
Type: TC
Location: 28077 - 29210 (+)
Type: TC
Location: 28077 - 29210 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1072_23
Type: TC
Location: 29229 - 30002 (+)
Type: TC
Location: 29229 - 30002 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900547475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.