Cluster: RavehSadkaT_2016_SRR6257433_bin.2_CGC5
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 5
- Substrate:
- Genome ID: RavehSadkaT_2016_SRR6257433_bin.2
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085 | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_7 | 7405 | 8706 | - | 9.A.40.2.1 |
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085 | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_8 | 8907 | 9830 | + | CE7 |
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085 | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_9 | 9843 | 10670 | + | CE7 |
| pfam | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085 | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_10 | 10723 | 11982 | - | ELFV_dehydrog | ELFV_dehydrog_N |
| sulfatase | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085 | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_11 | 12245 | 14884 | - | S1_2 |
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085 | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_12 | 15048 | 16250 | - | GT4 |
| STP | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085 | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_13 | 16464 | 17192 | - | Rhodanese |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085 | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_14 | 17341 | 18864 | + | 2.A.49.5.5 |
| pfam | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085 | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_15 | 19007 | 19804 | - | S6PP | Hydrolase_3 |
| TF | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085 | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_16 | 19807 | 20811 | - | LacI |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085 | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_17 | 21242 | 21976 | + | 3.A.1.24.2 |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085 | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_18 | 21969 | 22640 | + | 3.A.1.24.5 |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085 | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_19 | 22645 | 23469 | + | 3.A.1.24.5 |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085 | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_20 | 23560 | 24390 | + | 3.A.1.24.5 |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085 | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_21 | 24841 | 26427 | - | 4.A.1.1.16 |
| pfam | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085 | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_22 | 26446 | 27240 | - | Exo_endo_phos |
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085 | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_23 | 27266 | 29524 | - | GT35 |
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085 | RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_24 | 29526 | 31016 | - | GH77 |
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_7
Type: TC
Location: 7405 - 8706 (-)
Type: TC
Location: 7405 - 8706 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_8
Type: CAZyme
Location: 8907 - 9830 (+)
Type: CAZyme
Location: 8907 - 9830 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_9
Type: CAZyme
Location: 9843 - 10670 (+)
Type: CAZyme
Location: 9843 - 10670 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_10
Type: pfam
Location: 10723 - 11982 (-)
Type: pfam
Location: 10723 - 11982 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_11
Type: sulfatase
Location: 12245 - 14884 (-)
Type: sulfatase
Location: 12245 - 14884 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_12
Type: CAZyme
Location: 15048 - 16250 (-)
Type: CAZyme
Location: 15048 - 16250 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_13
Type: STP
Location: 16464 - 17192 (-)
Type: STP
Location: 16464 - 17192 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_14
Type: TC
Location: 17341 - 18864 (+)
Type: TC
Location: 17341 - 18864 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_15
Type: pfam
Location: 19007 - 19804 (-)
Type: pfam
Location: 19007 - 19804 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_16
Type: TF
Location: 19807 - 20811 (-)
Type: TF
Location: 19807 - 20811 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_17
Type: TC
Location: 21242 - 21976 (+)
Type: TC
Location: 21242 - 21976 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_18
Type: TC
Location: 21969 - 22640 (+)
Type: TC
Location: 21969 - 22640 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_19
Type: TC
Location: 22645 - 23469 (+)
Type: TC
Location: 22645 - 23469 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_20
Type: TC
Location: 23560 - 24390 (+)
Type: TC
Location: 23560 - 24390 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_21
Type: TC
Location: 24841 - 26427 (-)
Type: TC
Location: 24841 - 26427 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_22
Type: pfam
Location: 26446 - 27240 (-)
Type: pfam
Location: 26446 - 27240 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_23
Type: CAZyme
Location: 27266 - 29524 (-)
Type: CAZyme
Location: 27266 - 29524 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_1085_24
Type: CAZyme
Location: 29526 - 31016 (-)
Type: CAZyme
Location: 29526 - 31016 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Staphylococcales
Family
Gemellaceae
Genus
Gemella
Species
Gemella haemolysans_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.