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Cluster: RavehSadkaT_2016_SRR6257433_bin.2_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC RavehSadkaT_2016_SRR6257433_bin.2_k119_593 RavehSadkaT_2016_SRR6257433_bin.2_k119_593_5 3038 3922 - 2.A.9.3.2
TF RavehSadkaT_2016_SRR6257433_bin.2_k119_593 RavehSadkaT_2016_SRR6257433_bin.2_k119_593_6 4136 4570 + HTH_5
pfam RavehSadkaT_2016_SRR6257433_bin.2_k119_593 RavehSadkaT_2016_SRR6257433_bin.2_k119_593_7 4642 5871 + MFS_3 | MFS_1
TC RavehSadkaT_2016_SRR6257433_bin.2_k119_593 RavehSadkaT_2016_SRR6257433_bin.2_k119_593_8 5964 7244 - 2.A.40.1.4
TC RavehSadkaT_2016_SRR6257433_bin.2_k119_593 RavehSadkaT_2016_SRR6257433_bin.2_k119_593_9 7511 8095 - 3.D.1.8.1
pfam RavehSadkaT_2016_SRR6257433_bin.2_k119_593 RavehSadkaT_2016_SRR6257433_bin.2_k119_593_10 8153 10096 - tRNA-synt_2b | HGTP_anticodon | tRNA_SAD
pfam RavehSadkaT_2016_SRR6257433_bin.2_k119_593 RavehSadkaT_2016_SRR6257433_bin.2_k119_593_11 10436 11635 - LRR_4 | LRR_4
TC RavehSadkaT_2016_SRR6257433_bin.2_k119_593 RavehSadkaT_2016_SRR6257433_bin.2_k119_593_12 11616 13184 - 9.B.142.3.8
CAZyme RavehSadkaT_2016_SRR6257433_bin.2_k119_593 RavehSadkaT_2016_SRR6257433_bin.2_k119_593_13 13191 14153 - GT2
pfam RavehSadkaT_2016_SRR6257433_bin.2_k119_593 RavehSadkaT_2016_SRR6257433_bin.2_k119_593_14 14169 15200 - Sua5_yciO_yrdC | Sua5_C
TC RavehSadkaT_2016_SRR6257433_bin.2_k119_593 RavehSadkaT_2016_SRR6257433_bin.2_k119_593_15 15226 16011 - 3.A.1.25.4
TC RavehSadkaT_2016_SRR6257433_bin.2_k119_593 RavehSadkaT_2016_SRR6257433_bin.2_k119_593_16 16004 16891 - 3.A.1.26.7
TC RavehSadkaT_2016_SRR6257433_bin.2_k119_593 RavehSadkaT_2016_SRR6257433_bin.2_k119_593_17 16876 17697 - 3.A.1.25.6
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_593_5
Type: TC
Location: 3038 - 3922 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_593_6
Type: TF
Location: 4136 - 4570 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_593_7
Type: pfam
Location: 4642 - 5871 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_593_8
Type: TC
Location: 5964 - 7244 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_593_9
Type: TC
Location: 7511 - 8095 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_593_10
Type: pfam
Location: 8153 - 10096 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_593_11
Type: pfam
Location: 10436 - 11635 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_593_12
Type: TC
Location: 11616 - 13184 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_593_13
Type: CAZyme
Location: 13191 - 14153 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_593_14
Type: pfam
Location: 14169 - 15200 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_593_15
Type: TC
Location: 15226 - 16011 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_593_16
Type: TC
Location: 16004 - 16891 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_593_17
Type: TC
Location: 16876 - 17697 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Staphylococcales
→
Family
Gemellaceae
→
Genus
Gemella
→
Species
Gemella haemolysans_D

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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