Cluster: RavehSadkaT_2016_SRR6257433_bin.2_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: RavehSadkaT_2016_SRR6257433_bin.2
- CGC Family ID: CGCFAM_10896
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_587 | RavehSadkaT_2016_SRR6257433_bin.2_k119_587_8 | 5362 | 6321 | - | GH179 |
| pfam | RavehSadkaT_2016_SRR6257433_bin.2_k119_587 | RavehSadkaT_2016_SRR6257433_bin.2_k119_587_9 | 6558 | 6848 | - | EntA_Immun |
| NULL(UNKNOWN) | RavehSadkaT_2016_SRR6257433_bin.2_k119_587 | RavehSadkaT_2016_SRR6257433_bin.2_k119_587_10 | 6865 | 7026 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_587 | RavehSadkaT_2016_SRR6257433_bin.2_k119_587_11 | 7641 | 8285 | - | 9.B.27.2.3 |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_587 | RavehSadkaT_2016_SRR6257433_bin.2_k119_587_12 | 8368 | 9636 | - | 3.A.6.3.1 |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_587 | RavehSadkaT_2016_SRR6257433_bin.2_k119_587_13 | 9806 | 10693 | - | 2.A.7.3.12 |
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_587_8
Type: CAZyme
Location: 5362 - 6321 (-)
Type: CAZyme
Location: 5362 - 6321 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_587_9
Type: pfam
Location: 6558 - 6848 (-)
Type: pfam
Location: 6558 - 6848 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_587_10
Type:
Location: 6865 - 7026 (-)
Type:
Location: 6865 - 7026 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_587_11
Type: TC
Location: 7641 - 8285 (-)
Type: TC
Location: 7641 - 8285 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_587_12
Type: TC
Location: 8368 - 9636 (-)
Type: TC
Location: 8368 - 9636 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_587_13
Type: TC
Location: 9806 - 10693 (-)
Type: TC
Location: 9806 - 10693 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Staphylococcales
Family
Gemellaceae
Genus
Gemella
Species
Gemella haemolysans_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.