Cluster: RavehSadkaT_2016_SRR6257433_bin.2_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: alpha-glucan
- Genome ID: RavehSadkaT_2016_SRR6257433_bin.2
- CGC Family ID: CGCFAM_00004
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_548 | RavehSadkaT_2016_SRR6257433_bin.2_k119_548_7 | 4884 | 5693 | - | 1.C.109.1.5 |
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_548 | RavehSadkaT_2016_SRR6257433_bin.2_k119_548_8 | 5943 | 8336 | - | GT35 |
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_548 | RavehSadkaT_2016_SRR6257433_bin.2_k119_548_9 | 8361 | 9779 | - | GT5 |
| pfam | RavehSadkaT_2016_SRR6257433_bin.2_k119_548 | RavehSadkaT_2016_SRR6257433_bin.2_k119_548_10 | 9923 | 11035 | - | NTP_transferase | Hexapep_GlmU |
| pfam | RavehSadkaT_2016_SRR6257433_bin.2_k119_548 | RavehSadkaT_2016_SRR6257433_bin.2_k119_548_11 | 11037 | 12209 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_548 | RavehSadkaT_2016_SRR6257433_bin.2_k119_548_12 | 12238 | 14091 | - | GH13_9 |
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_548_7
Type: TC
Location: 4884 - 5693 (-)
Type: TC
Location: 4884 - 5693 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_548_8
Type: CAZyme
Location: 5943 - 8336 (-)
Type: CAZyme
Location: 5943 - 8336 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_548_9
Type: CAZyme
Location: 8361 - 9779 (-)
Type: CAZyme
Location: 8361 - 9779 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_548_10
Type: pfam
Location: 9923 - 11035 (-)
Type: pfam
Location: 9923 - 11035 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_548_11
Type: pfam
Location: 11037 - 12209 (-)
Type: pfam
Location: 11037 - 12209 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_548_12
Type: CAZyme
Location: 12238 - 14091 (-)
Type: CAZyme
Location: 12238 - 14091 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Staphylococcales
Family
Gemellaceae
Genus
Gemella
Species
Gemella haemolysans_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.