Cluster: RavehSadkaT_2016_SRR6257433_bin.2_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: RavehSadkaT_2016_SRR6257433_bin.2
- CGC Family ID: CGCFAM_05369
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_2232 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2232_10 | 8407 | 9789 | - | 2.A.66.1.32 |
| TF | RavehSadkaT_2016_SRR6257433_bin.2_k119_2232 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2232_11 | 9802 | 10206 | - | MarR |
| peptidase | RavehSadkaT_2016_SRR6257433_bin.2_k119_2232 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2232_12 | 10379 | 11026 | - | C15.001 |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_2232 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2232_13 | 11403 | 13019 | + | 3.A.1.112.9 |
| pfam | RavehSadkaT_2016_SRR6257433_bin.2_k119_2232 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2232_14 | 13397 | 14044 | + | Fer4_12 |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_2232 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2232_15 | 14171 | 16321 | + | 9.B.74.1.1 |
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_2232 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2232_16 | 16665 | 17666 | + | GT2 |
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2232_10
Type: TC
Location: 8407 - 9789 (-)
Type: TC
Location: 8407 - 9789 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2232_11
Type: TF
Location: 9802 - 10206 (-)
Type: TF
Location: 9802 - 10206 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2232_12
Type: peptidase
Location: 10379 - 11026 (-)
Type: peptidase
Location: 10379 - 11026 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2232_13
Type: TC
Location: 11403 - 13019 (+)
Type: TC
Location: 11403 - 13019 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2232_14
Type: pfam
Location: 13397 - 14044 (+)
Type: pfam
Location: 13397 - 14044 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2232_15
Type: TC
Location: 14171 - 16321 (+)
Type: TC
Location: 14171 - 16321 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2232_16
Type: CAZyme
Location: 16665 - 17666 (+)
Type: CAZyme
Location: 16665 - 17666 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Staphylococcales
Family
Gemellaceae
Genus
Gemella
Species
Gemella haemolysans_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.