Cluster: RavehSadkaT_2016_SRR6257433_bin.2_CGC13
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: RavehSadkaT_2016_SRR6257433_bin.2
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_2204 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2204_6 | 5119 | 6678 | + | 3.A.1.5.20 |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_2204 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2204_7 | 6873 | 7829 | + | 3.A.1.5.20 |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_2204 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2204_8 | 7831 | 8655 | + | 3.A.1.5.20 |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_2204 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2204_9 | 8657 | 9523 | + | 3.A.1.5.18 |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_2204 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2204_10 | 9523 | 10416 | + | 3.A.1.5.19 |
| pfam | RavehSadkaT_2016_SRR6257433_bin.2_k119_2204 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2204_11 | 10561 | 11052 | + | tRNA_edit |
| pfam | RavehSadkaT_2016_SRR6257433_bin.2_k119_2204 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2204_12 | 11333 | 12121 | + | TatD_DNase |
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_2204 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2204_13 | 12126 | 13166 | + | GH23 |
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2204_6
Type: TC
Location: 5119 - 6678 (+)
Type: TC
Location: 5119 - 6678 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2204_7
Type: TC
Location: 6873 - 7829 (+)
Type: TC
Location: 6873 - 7829 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2204_8
Type: TC
Location: 7831 - 8655 (+)
Type: TC
Location: 7831 - 8655 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2204_9
Type: TC
Location: 8657 - 9523 (+)
Type: TC
Location: 8657 - 9523 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2204_10
Type: TC
Location: 9523 - 10416 (+)
Type: TC
Location: 9523 - 10416 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2204_11
Type: pfam
Location: 10561 - 11052 (+)
Type: pfam
Location: 10561 - 11052 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2204_12
Type: pfam
Location: 11333 - 12121 (+)
Type: pfam
Location: 11333 - 12121 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2204_13
Type: CAZyme
Location: 12126 - 13166 (+)
Type: CAZyme
Location: 12126 - 13166 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Staphylococcales
Family
Gemellaceae
Genus
Gemella
Species
Gemella haemolysans_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.