Cluster: RavehSadkaT_2016_SRR6257433_bin.2_CGC12
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: RavehSadkaT_2016_SRR6257433_bin.2
- CGC Family ID: CGCFAM_00002
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_6 | 5125 | 6057 | - | GT14 |
| pfam | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_7 | 6127 | 7350 | - | Wzy_C |
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_8 | 7362 | 8315 | - | GT2 |
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_9 | 8330 | 9382 | - | GT4 |
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_10 | 9478 | 10446 | - | GT32 |
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_11 | 10443 | 11447 | - | GT2 |
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_12 | 11495 | 12280 | - | GT111 |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_13 | 12458 | 13822 | - | 9.B.18.1.2 |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_14 | 13849 | 14553 | - | 8.A.3.2.3 |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_15 | 14565 | 15266 | - | 8.A.3.2.3 |
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_6
Type: CAZyme
Location: 5125 - 6057 (-)
Type: CAZyme
Location: 5125 - 6057 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_7
Type: pfam
Location: 6127 - 7350 (-)
Type: pfam
Location: 6127 - 7350 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_8
Type: CAZyme
Location: 7362 - 8315 (-)
Type: CAZyme
Location: 7362 - 8315 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_9
Type: CAZyme
Location: 8330 - 9382 (-)
Type: CAZyme
Location: 8330 - 9382 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_10
Type: CAZyme
Location: 9478 - 10446 (-)
Type: CAZyme
Location: 9478 - 10446 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_11
Type: CAZyme
Location: 10443 - 11447 (-)
Type: CAZyme
Location: 10443 - 11447 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_12
Type: CAZyme
Location: 11495 - 12280 (-)
Type: CAZyme
Location: 11495 - 12280 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_13
Type: TC
Location: 12458 - 13822 (-)
Type: TC
Location: 12458 - 13822 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_14
Type: TC
Location: 13849 - 14553 (-)
Type: TC
Location: 13849 - 14553 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2182_15
Type: TC
Location: 14565 - 15266 (-)
Type: TC
Location: 14565 - 15266 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Staphylococcales
Family
Gemellaceae
Genus
Gemella
Species
Gemella haemolysans_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.