Cluster: RavehSadkaT_2016_SRR6257433_bin.2_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: RavehSadkaT_2016_SRR6257433_bin.2
- CGC Family ID: CGCFAM_03494
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_2060 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2060_1 | 2 | 1540 | + | 4.C.1.1.6 |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_2060 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2060_2 | 1542 | 2699 | + | 2.A.50.2.1 |
| pfam | RavehSadkaT_2016_SRR6257433_bin.2_k119_2060 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2060_3 | 2721 | 2954 | + | PP-binding |
| pfam | RavehSadkaT_2016_SRR6257433_bin.2_k119_2060 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2060_4 | 2957 | 4123 | + | DltD |
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_2060 | RavehSadkaT_2016_SRR6257433_bin.2_k119_2060_5 | 4474 | 5304 | + | CE1 |
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2060_1
Type: TC
Location: 2 - 1540 (+)
Type: TC
Location: 2 - 1540 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2060_2
Type: TC
Location: 1542 - 2699 (+)
Type: TC
Location: 1542 - 2699 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2060_3
Type: pfam
Location: 2721 - 2954 (+)
Type: pfam
Location: 2721 - 2954 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2060_4
Type: pfam
Location: 2957 - 4123 (+)
Type: pfam
Location: 2957 - 4123 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_2060_5
Type: CAZyme
Location: 4474 - 5304 (+)
Type: CAZyme
Location: 4474 - 5304 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Staphylococcales
Family
Gemellaceae
Genus
Gemella
Species
Gemella haemolysans_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.