Cluster: RavehSadkaT_2016_SRR6257433_bin.2_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: RavehSadkaT_2016_SRR6257433_bin.2
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_300 | RavehSadkaT_2016_SRR6257433_bin.2_k119_300_5 | 2436 | 3569 | - | CBM50 | CBM50 |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_300 | RavehSadkaT_2016_SRR6257433_bin.2_k119_300_6 | 3915 | 4643 | + | 5.A.1.2.7 |
| pfam | RavehSadkaT_2016_SRR6257433_bin.2_k119_300 | RavehSadkaT_2016_SRR6257433_bin.2_k119_300_7 | 4673 | 5251 | + | Thioredoxin | GSHPx | AhpC-TSA | Redoxin | Thioredoxin_8 |
| CAZyme | RavehSadkaT_2016_SRR6257433_bin.2_k119_300 | RavehSadkaT_2016_SRR6257433_bin.2_k119_300_8 | 5365 | 6177 | - | CE7 |
| TC | RavehSadkaT_2016_SRR6257433_bin.2_k119_300 | RavehSadkaT_2016_SRR6257433_bin.2_k119_300_9 | 6359 | 7912 | - | 2.A.21.3.20 |
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_300_5
Type: CAZyme
Location: 2436 - 3569 (-)
Type: CAZyme
Location: 2436 - 3569 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_300_6
Type: TC
Location: 3915 - 4643 (+)
Type: TC
Location: 3915 - 4643 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_300_7
Type: pfam
Location: 4673 - 5251 (+)
Type: pfam
Location: 4673 - 5251 (+)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_300_8
Type: CAZyme
Location: 5365 - 6177 (-)
Type: CAZyme
Location: 5365 - 6177 (-)
Gene ID: RavehSadkaT_2016_SRR6257433_bin.2_k119_300_9
Type: TC
Location: 6359 - 7912 (-)
Type: TC
Location: 6359 - 7912 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Staphylococcales
Family
Gemellaceae
Genus
Gemella
Species
Gemella haemolysans_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.