Cluster: RavehSadkaT_2015_SRR1779135_bin.3_CGC8
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: RavehSadkaT_2015_SRR1779135_bin.3
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2015_SRR1779135_bin.3_k141_11889 | RavehSadkaT_2015_SRR1779135_bin.3_k141_11889_220 | 235665 | 236342 | + | 3.A.2.1.6 |
| pfam | RavehSadkaT_2015_SRR1779135_bin.3_k141_11889 | RavehSadkaT_2015_SRR1779135_bin.3_k141_11889_221 | 236396 | 236656 | + | ATP-synt_C |
| pfam | RavehSadkaT_2015_SRR1779135_bin.3_k141_11889 | RavehSadkaT_2015_SRR1779135_bin.3_k141_11889_222 | 236690 | 237184 | + | ATP-synt_B |
| TC | RavehSadkaT_2015_SRR1779135_bin.3_k141_11889 | RavehSadkaT_2015_SRR1779135_bin.3_k141_11889_223 | 237141 | 237758 | + | 3.A.2.1.6 |
| TC | RavehSadkaT_2015_SRR1779135_bin.3_k141_11889 | RavehSadkaT_2015_SRR1779135_bin.3_k141_11889_224 | 237755 | 239290 | + | 3.A.2.1.5 |
| TC | RavehSadkaT_2015_SRR1779135_bin.3_k141_11889 | RavehSadkaT_2015_SRR1779135_bin.3_k141_11889_225 | 239295 | 240161 | + | 3.A.2.1.5 |
| TC | RavehSadkaT_2015_SRR1779135_bin.3_k141_11889 | RavehSadkaT_2015_SRR1779135_bin.3_k141_11889_226 | 240194 | 241615 | + | 3.A.2.1.2 |
| TC | RavehSadkaT_2015_SRR1779135_bin.3_k141_11889 | RavehSadkaT_2015_SRR1779135_bin.3_k141_11889_227 | 241619 | 242047 | + | 3.A.2.1.2 |
| CAZyme | RavehSadkaT_2015_SRR1779135_bin.3_k141_11889 | RavehSadkaT_2015_SRR1779135_bin.3_k141_11889_228 | 242224 | 243054 | + | CE4 |
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_11889_220
Type: TC
Location: 235665 - 236342 (+)
Type: TC
Location: 235665 - 236342 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_11889_221
Type: pfam
Location: 236396 - 236656 (+)
Type: pfam
Location: 236396 - 236656 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_11889_222
Type: pfam
Location: 236690 - 237184 (+)
Type: pfam
Location: 236690 - 237184 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_11889_223
Type: TC
Location: 237141 - 237758 (+)
Type: TC
Location: 237141 - 237758 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_11889_224
Type: TC
Location: 237755 - 239290 (+)
Type: TC
Location: 237755 - 239290 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_11889_225
Type: TC
Location: 239295 - 240161 (+)
Type: TC
Location: 239295 - 240161 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_11889_226
Type: TC
Location: 240194 - 241615 (+)
Type: TC
Location: 240194 - 241615 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_11889_227
Type: TC
Location: 241619 - 242047 (+)
Type: TC
Location: 241619 - 242047 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_11889_228
Type: CAZyme
Location: 242224 - 243054 (+)
Type: CAZyme
Location: 242224 - 243054 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Negativicoccaceae
Genus
Negativicoccus
Species
Negativicoccus sp900556745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.