Cluster: RavehSadkaT_2015_SRR1779135_bin.3_CGC7
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: RavehSadkaT_2015_SRR1779135_bin.3
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RavehSadkaT_2015_SRR1779135_bin.3_k141_8355 | RavehSadkaT_2015_SRR1779135_bin.3_k141_8355_191 | 209484 | 210224 | + | GT26 |
| pfam | RavehSadkaT_2015_SRR1779135_bin.3_k141_8355 | RavehSadkaT_2015_SRR1779135_bin.3_k141_8355_192 | 210227 | 210868 | + | PS_Dcarbxylase |
| pfam | RavehSadkaT_2015_SRR1779135_bin.3_k141_8355 | RavehSadkaT_2015_SRR1779135_bin.3_k141_8355_193 | 210861 | 211553 | + | CDP-OH_P_transf |
| CAZyme | RavehSadkaT_2015_SRR1779135_bin.3_k141_8355 | RavehSadkaT_2015_SRR1779135_bin.3_k141_8355_194 | 211555 | 212817 | + | GT2 |
| pfam | RavehSadkaT_2015_SRR1779135_bin.3_k141_8355 | RavehSadkaT_2015_SRR1779135_bin.3_k141_8355_195 | 212817 | 213596 | + | SurE |
| peptidase | RavehSadkaT_2015_SRR1779135_bin.3_k141_8355 | RavehSadkaT_2015_SRR1779135_bin.3_k141_8355_196 | 213633 | 214769 | - | M20.UND |
| TC | RavehSadkaT_2015_SRR1779135_bin.3_k141_8355 | RavehSadkaT_2015_SRR1779135_bin.3_k141_8355_197 | 214964 | 215701 | + | 9.A.5.4.2 |
| TC | RavehSadkaT_2015_SRR1779135_bin.3_k141_8355 | RavehSadkaT_2015_SRR1779135_bin.3_k141_8355_198 | 215694 | 216161 | + | 9.B.156.1.2 |
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_8355_191
Type: CAZyme
Location: 209484 - 210224 (+)
Type: CAZyme
Location: 209484 - 210224 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_8355_192
Type: pfam
Location: 210227 - 210868 (+)
Type: pfam
Location: 210227 - 210868 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_8355_193
Type: pfam
Location: 210861 - 211553 (+)
Type: pfam
Location: 210861 - 211553 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_8355_194
Type: CAZyme
Location: 211555 - 212817 (+)
Type: CAZyme
Location: 211555 - 212817 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_8355_195
Type: pfam
Location: 212817 - 213596 (+)
Type: pfam
Location: 212817 - 213596 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_8355_196
Type: peptidase
Location: 213633 - 214769 (-)
Type: peptidase
Location: 213633 - 214769 (-)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_8355_197
Type: TC
Location: 214964 - 215701 (+)
Type: TC
Location: 214964 - 215701 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_8355_198
Type: TC
Location: 215694 - 216161 (+)
Type: TC
Location: 215694 - 216161 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Negativicoccaceae
Genus
Negativicoccus
Species
Negativicoccus sp900556745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.