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Cluster: RavehSadkaT_2015_SRR1779135_bin.3_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme RavehSadkaT_2015_SRR1779135_bin.3_k141_7236 RavehSadkaT_2015_SRR1779135_bin.3_k141_7236_42 45711 46751 + GT9
TC RavehSadkaT_2015_SRR1779135_bin.3_k141_7236 RavehSadkaT_2015_SRR1779135_bin.3_k141_7236_43 46763 48124 - 2.A.66.1.21
pfam RavehSadkaT_2015_SRR1779135_bin.3_k141_7236 RavehSadkaT_2015_SRR1779135_bin.3_k141_7236_44 48285 49382 + CusB_dom_1 | OEP | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC RavehSadkaT_2015_SRR1779135_bin.3_k141_7236 RavehSadkaT_2015_SRR1779135_bin.3_k141_7236_45 49391 50089 + 3.A.1.122.2
TC RavehSadkaT_2015_SRR1779135_bin.3_k141_7236 RavehSadkaT_2015_SRR1779135_bin.3_k141_7236_46 50082 51299 + 3.A.1.122.1
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_7236_42
Type: CAZyme
Location: 45711 - 46751 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_7236_43
Type: TC
Location: 46763 - 48124 (-)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_7236_44
Type: pfam
Location: 48285 - 49382 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_7236_45
Type: TC
Location: 49391 - 50089 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_7236_46
Type: TC
Location: 50082 - 51299 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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