Cluster: RavehSadkaT_2015_SRR1779135_bin.3_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: RavehSadkaT_2015_SRR1779135_bin.3
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RavehSadkaT_2015_SRR1779135_bin.3_k141_5830 | RavehSadkaT_2015_SRR1779135_bin.3_k141_5830_33 | 32649 | 34715 | + | GT51 |
| pfam | RavehSadkaT_2015_SRR1779135_bin.3_k141_5830 | RavehSadkaT_2015_SRR1779135_bin.3_k141_5830_34 | 35099 | 35635 | - | Fer4_12 |
| pfam | RavehSadkaT_2015_SRR1779135_bin.3_k141_5830 | RavehSadkaT_2015_SRR1779135_bin.3_k141_5830_35 | 35643 | 37793 | - | Gly_radical | ATP-cone | NRDD |
| TC | RavehSadkaT_2015_SRR1779135_bin.3_k141_5830 | RavehSadkaT_2015_SRR1779135_bin.3_k141_5830_36 | 38230 | 39273 | + | 3.A.1.24.1 |
| TC | RavehSadkaT_2015_SRR1779135_bin.3_k141_5830 | RavehSadkaT_2015_SRR1779135_bin.3_k141_5830_37 | 39254 | 39907 | + | 3.A.1.24.5 |
| TC | RavehSadkaT_2015_SRR1779135_bin.3_k141_5830 | RavehSadkaT_2015_SRR1779135_bin.3_k141_5830_38 | 39943 | 40764 | + | 3.A.1.24.5 |
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_5830_33
Type: CAZyme
Location: 32649 - 34715 (+)
Type: CAZyme
Location: 32649 - 34715 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_5830_34
Type: pfam
Location: 35099 - 35635 (-)
Type: pfam
Location: 35099 - 35635 (-)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_5830_35
Type: pfam
Location: 35643 - 37793 (-)
Type: pfam
Location: 35643 - 37793 (-)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_5830_36
Type: TC
Location: 38230 - 39273 (+)
Type: TC
Location: 38230 - 39273 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_5830_37
Type: TC
Location: 39254 - 39907 (+)
Type: TC
Location: 39254 - 39907 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_5830_38
Type: TC
Location: 39943 - 40764 (+)
Type: TC
Location: 39943 - 40764 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Negativicoccaceae
Genus
Negativicoccus
Species
Negativicoccus sp900556745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.