Cluster: RavehSadkaT_2015_SRR1779135_bin.3_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: RavehSadkaT_2015_SRR1779135_bin.3
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2015_SRR1779135_bin.3_k141_5419 | RavehSadkaT_2015_SRR1779135_bin.3_k141_5419_48 | 47198 | 48157 | + | 9.B.146.1.6 |
| pfam | RavehSadkaT_2015_SRR1779135_bin.3_k141_5419 | RavehSadkaT_2015_SRR1779135_bin.3_k141_5419_49 | 48163 | 49548 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| CAZyme | RavehSadkaT_2015_SRR1779135_bin.3_k141_5419 | RavehSadkaT_2015_SRR1779135_bin.3_k141_5419_50 | 49548 | 50651 | + | GT28 |
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_5419_48
Type: TC
Location: 47198 - 48157 (+)
Type: TC
Location: 47198 - 48157 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_5419_49
Type: pfam
Location: 48163 - 49548 (+)
Type: pfam
Location: 48163 - 49548 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_5419_50
Type: CAZyme
Location: 49548 - 50651 (+)
Type: CAZyme
Location: 49548 - 50651 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Negativicoccaceae
Genus
Negativicoccus
Species
Negativicoccus sp900556745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.