Cluster: RavehSadkaT_2015_SRR1779135_bin.3_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: RavehSadkaT_2015_SRR1779135_bin.3
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RavehSadkaT_2015_SRR1779135_bin.3_k141_1924 | RavehSadkaT_2015_SRR1779135_bin.3_k141_1924_23 | 24427 | 25371 | + | GT2 |
| peptidase | RavehSadkaT_2015_SRR1779135_bin.3_k141_1924 | RavehSadkaT_2015_SRR1779135_bin.3_k141_1924_24 | 25501 | 26163 | + | C40.UNW |
| TC | RavehSadkaT_2015_SRR1779135_bin.3_k141_1924 | RavehSadkaT_2015_SRR1779135_bin.3_k141_1924_25 | 26217 | 26933 | + | 3.A.1.15.11 |
| TC | RavehSadkaT_2015_SRR1779135_bin.3_k141_1924 | RavehSadkaT_2015_SRR1779135_bin.3_k141_1924_26 | 26930 | 27748 | + | 3.A.1.15.11 |
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_1924_23
Type: CAZyme
Location: 24427 - 25371 (+)
Type: CAZyme
Location: 24427 - 25371 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_1924_24
Type: peptidase
Location: 25501 - 26163 (+)
Type: peptidase
Location: 25501 - 26163 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_1924_25
Type: TC
Location: 26217 - 26933 (+)
Type: TC
Location: 26217 - 26933 (+)
Gene ID: RavehSadkaT_2015_SRR1779135_bin.3_k141_1924_26
Type: TC
Location: 26930 - 27748 (+)
Type: TC
Location: 26930 - 27748 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Negativicoccaceae
Genus
Negativicoccus
Species
Negativicoccus sp900556745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.