Cluster: RavehSadkaT_2015_SRR1779126_bin.1_CGC42
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 2
- Substrate:
- Genome ID: RavehSadkaT_2015_SRR1779126_bin.1
- CGC Family ID: CGCFAM_00885
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_11282 | RavehSadkaT_2015_SRR1779126_bin.1_k141_11282_4 | 3529 | 4890 | + | 4.A.1.2.9 |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_11282 | RavehSadkaT_2015_SRR1779126_bin.1_k141_11282_5 | 5288 | 6169 | + | CE1 |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_11282 | RavehSadkaT_2015_SRR1779126_bin.1_k141_11282_6 | 6313 | 7386 | + | GH170 |
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_11282_4
Type: TC
Location: 3529 - 4890 (+)
Type: TC
Location: 3529 - 4890 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_11282_5
Type: CAZyme
Location: 5288 - 6169 (+)
Type: CAZyme
Location: 5288 - 6169 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_11282_6
Type: CAZyme
Location: 6313 - 7386 (+)
Type: CAZyme
Location: 6313 - 7386 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.