Cluster: RavehSadkaT_2015_SRR1779126_bin.1_CGC38
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: RavehSadkaT_2015_SRR1779126_bin.1
- CGC Family ID: CGCFAM_10795
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_9181 | RavehSadkaT_2015_SRR1779126_bin.1_k141_9181_1 | 2 | 3913 | - | GH136 |
| NULL(UNKNOWN) | RavehSadkaT_2015_SRR1779126_bin.1_k141_9181 | RavehSadkaT_2015_SRR1779126_bin.1_k141_9181_2 | 4405 | 5070 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | RavehSadkaT_2015_SRR1779126_bin.1_k141_9181 | RavehSadkaT_2015_SRR1779126_bin.1_k141_9181_3 | 5181 | 5807 | - | DUF624 |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_9181 | RavehSadkaT_2015_SRR1779126_bin.1_k141_9181_4 | 5823 | 7826 | - | GH115 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_9181 | RavehSadkaT_2015_SRR1779126_bin.1_k141_9181_5 | 7900 | 8754 | - | 3.A.1.1.11 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_9181 | RavehSadkaT_2015_SRR1779126_bin.1_k141_9181_6 | 8757 | 9158 | - | 3.A.1.1.11 |
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_9181_1
Type: CAZyme
Location: 2 - 3913 (-)
Type: CAZyme
Location: 2 - 3913 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_9181_2
Type:
Location: 4405 - 5070 (-)
Type:
Location: 4405 - 5070 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_9181_3
Type: pfam
Location: 5181 - 5807 (-)
Type: pfam
Location: 5181 - 5807 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_9181_4
Type: CAZyme
Location: 5823 - 7826 (-)
Type: CAZyme
Location: 5823 - 7826 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_9181_5
Type: TC
Location: 7900 - 8754 (-)
Type: TC
Location: 7900 - 8754 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_9181_6
Type: TC
Location: 8757 - 9158 (-)
Type: TC
Location: 8757 - 9158 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.