Cluster: RavehSadkaT_2015_SRR1779126_bin.1_CGC28
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: RavehSadkaT_2015_SRR1779126_bin.1
- CGC Family ID: CGCFAM_08014
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155 | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_1 | 1 | 1137 | + | 2.A.4.7.7 |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155 | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_2 | 1324 | 2784 | - | GH1 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155 | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_3 | 2787 | 4172 | - | 4.A.1.2.11 |
| TF | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155 | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_4 | 4352 | 5341 | + | HTH_AraC | HTH_AraC |
| pfam | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155 | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_5 | 5399 | 6355 | - | BcrAD_BadFG |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155 | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_6 | 6366 | 7460 | - | GH170 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155 | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_7 | 7525 | 8895 | - | 4.A.3.2.8 |
| pfam | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155 | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_8 | 8963 | 9274 | - | PTS_IIB |
| NULL(UNKNOWN) | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155 | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_9 | 9327 | 9659 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155 | RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_10 | 9687 | 10043 | - | 4.A.3.2.8 |
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_1
Type: TC
Location: 1 - 1137 (+)
Type: TC
Location: 1 - 1137 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_2
Type: CAZyme
Location: 1324 - 2784 (-)
Type: CAZyme
Location: 1324 - 2784 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_3
Type: TC
Location: 2787 - 4172 (-)
Type: TC
Location: 2787 - 4172 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_4
Type: TF
Location: 4352 - 5341 (+)
Type: TF
Location: 4352 - 5341 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_5
Type: pfam
Location: 5399 - 6355 (-)
Type: pfam
Location: 5399 - 6355 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_6
Type: CAZyme
Location: 6366 - 7460 (-)
Type: CAZyme
Location: 6366 - 7460 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_7
Type: TC
Location: 7525 - 8895 (-)
Type: TC
Location: 7525 - 8895 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_8
Type: pfam
Location: 8963 - 9274 (-)
Type: pfam
Location: 8963 - 9274 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_9
Type:
Location: 9327 - 9659 (-)
Type:
Location: 9327 - 9659 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_7155_10
Type: TC
Location: 9687 - 10043 (-)
Type: TC
Location: 9687 - 10043 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.