Cluster: RavehSadkaT_2015_SRR1779126_bin.1_CGC27
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: RavehSadkaT_2015_SRR1779126_bin.1
- CGC Family ID: CGCFAM_00456
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_7150 | RavehSadkaT_2015_SRR1779126_bin.1_k141_7150_4 | 2958 | 4013 | - | 9.B.18.2.1 |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_7150 | RavehSadkaT_2015_SRR1779126_bin.1_k141_7150_5 | 4030 | 5229 | - | GT4 |
| pfam | RavehSadkaT_2015_SRR1779126_bin.1_k141_7150 | RavehSadkaT_2015_SRR1779126_bin.1_k141_7150_6 | 5242 | 6189 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NmrA | NAD_binding_4 | KR | NAD_binding_10 | GDP_Man_Dehyd |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_7150 | RavehSadkaT_2015_SRR1779126_bin.1_k141_7150_7 | 6208 | 6828 | - | 9.B.18.1.3 |
| pfam | RavehSadkaT_2015_SRR1779126_bin.1_k141_7150 | RavehSadkaT_2015_SRR1779126_bin.1_k141_7150_8 | 6852 | 7415 | - | Hexapep | PglD_N |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_7150 | RavehSadkaT_2015_SRR1779126_bin.1_k141_7150_9 | 7645 | 8298 | - | 8.A.3.2.1 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_7150 | RavehSadkaT_2015_SRR1779126_bin.1_k141_7150_10 | 8308 | 8985 | - | 8.A.3.2.4 |
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_7150_4
Type: TC
Location: 2958 - 4013 (-)
Type: TC
Location: 2958 - 4013 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_7150_5
Type: CAZyme
Location: 4030 - 5229 (-)
Type: CAZyme
Location: 4030 - 5229 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_7150_6
Type: pfam
Location: 5242 - 6189 (-)
Type: pfam
Location: 5242 - 6189 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_7150_7
Type: TC
Location: 6208 - 6828 (-)
Type: TC
Location: 6208 - 6828 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_7150_8
Type: pfam
Location: 6852 - 7415 (-)
Type: pfam
Location: 6852 - 7415 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_7150_9
Type: TC
Location: 7645 - 8298 (-)
Type: TC
Location: 7645 - 8298 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_7150_10
Type: TC
Location: 8308 - 8985 (-)
Type: TC
Location: 8308 - 8985 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.