Cluster: RavehSadkaT_2015_SRR1779126_bin.1_CGC24
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: RavehSadkaT_2015_SRR1779126_bin.1
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_6396 | RavehSadkaT_2015_SRR1779126_bin.1_k141_6396_2 | 458 | 2443 | - | PL12_1 |
| pfam | RavehSadkaT_2015_SRR1779126_bin.1_k141_6396 | RavehSadkaT_2015_SRR1779126_bin.1_k141_6396_3 | 2455 | 2727 | - | YajC |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_6396 | RavehSadkaT_2015_SRR1779126_bin.1_k141_6396_4 | 2730 | 3140 | - | 4.A.6.1.18 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_6396 | RavehSadkaT_2015_SRR1779126_bin.1_k141_6396_5 | 3152 | 3967 | - | 4.A.6.1.14 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_6396 | RavehSadkaT_2015_SRR1779126_bin.1_k141_6396_6 | 3957 | 4766 | - | 4.A.6.1.14 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_6396 | RavehSadkaT_2015_SRR1779126_bin.1_k141_6396_7 | 4783 | 5280 | - | 4.A.6.1.14 |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_6396 | RavehSadkaT_2015_SRR1779126_bin.1_k141_6396_8 | 5322 | 6509 | - | GH88 |
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_6396_2
Type: CAZyme
Location: 458 - 2443 (-)
Type: CAZyme
Location: 458 - 2443 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_6396_3
Type: pfam
Location: 2455 - 2727 (-)
Type: pfam
Location: 2455 - 2727 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_6396_4
Type: TC
Location: 2730 - 3140 (-)
Type: TC
Location: 2730 - 3140 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_6396_5
Type: TC
Location: 3152 - 3967 (-)
Type: TC
Location: 3152 - 3967 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_6396_6
Type: TC
Location: 3957 - 4766 (-)
Type: TC
Location: 3957 - 4766 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_6396_7
Type: TC
Location: 4783 - 5280 (-)
Type: TC
Location: 4783 - 5280 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_6396_8
Type: CAZyme
Location: 5322 - 6509 (-)
Type: CAZyme
Location: 5322 - 6509 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.