Cluster: RavehSadkaT_2015_SRR1779126_bin.1_CGC21
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: RavehSadkaT_2015_SRR1779126_bin.1
- CGC Family ID: CGCFAM_00673
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_5638 | RavehSadkaT_2015_SRR1779126_bin.1_k141_5638_3 | 1562 | 2152 | + | 2.A.107.1.2 |
| STP | RavehSadkaT_2015_SRR1779126_bin.1_k141_5638 | RavehSadkaT_2015_SRR1779126_bin.1_k141_5638_4 | 2549 | 3898 | + | Fer4 |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_5638 | RavehSadkaT_2015_SRR1779126_bin.1_k141_5638_5 | 4038 | 5957 | - | GT2 | GT2 |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_5638 | RavehSadkaT_2015_SRR1779126_bin.1_k141_5638_6 | 6135 | 7139 | + | GT2 |
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_5638_3
Type: TC
Location: 1562 - 2152 (+)
Type: TC
Location: 1562 - 2152 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_5638_4
Type: STP
Location: 2549 - 3898 (+)
Type: STP
Location: 2549 - 3898 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_5638_5
Type: CAZyme
Location: 4038 - 5957 (-)
Type: CAZyme
Location: 4038 - 5957 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_5638_6
Type: CAZyme
Location: 6135 - 7139 (+)
Type: CAZyme
Location: 6135 - 7139 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.