Cluster: RavehSadkaT_2015_SRR1779126_bin.1_CGC17
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate: beta-glucan
- Genome ID: RavehSadkaT_2015_SRR1779126_bin.1
- CGC Family ID: CGCFAM_00042
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_5130 | RavehSadkaT_2015_SRR1779126_bin.1_k141_5130_9 | 8506 | 9750 | + | 4.A.3.2.6 |
| pfam | RavehSadkaT_2015_SRR1779126_bin.1_k141_5130 | RavehSadkaT_2015_SRR1779126_bin.1_k141_5130_10 | 9789 | 10130 | + | PTS_IIA |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_5130 | RavehSadkaT_2015_SRR1779126_bin.1_k141_5130_11 | 10442 | 11881 | + | GH1 |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_5130 | RavehSadkaT_2015_SRR1779126_bin.1_k141_5130_12 | 11897 | 13342 | + | GH1 |
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_5130_9
Type: TC
Location: 8506 - 9750 (+)
Type: TC
Location: 8506 - 9750 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_5130_10
Type: pfam
Location: 9789 - 10130 (+)
Type: pfam
Location: 9789 - 10130 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_5130_11
Type: CAZyme
Location: 10442 - 11881 (+)
Type: CAZyme
Location: 10442 - 11881 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_5130_12
Type: CAZyme
Location: 11897 - 13342 (+)
Type: CAZyme
Location: 11897 - 13342 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.