Cluster: RavehSadkaT_2015_SRR1779126_bin.1_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: RavehSadkaT_2015_SRR1779126_bin.1
- CGC Family ID: CGCFAM_00027
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_4416 | RavehSadkaT_2015_SRR1779126_bin.1_k141_4416_1 | 3 | 833 | - | GH1 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_4416 | RavehSadkaT_2015_SRR1779126_bin.1_k141_4416_2 | 855 | 2720 | - | 4.A.1.2.11 |
| TF | RavehSadkaT_2015_SRR1779126_bin.1_k141_4416 | RavehSadkaT_2015_SRR1779126_bin.1_k141_4416_3 | 2883 | 3680 | - | HTH_6 |
| NULL(UNKNOWN) | RavehSadkaT_2015_SRR1779126_bin.1_k141_4416 | RavehSadkaT_2015_SRR1779126_bin.1_k141_4416_4 | 3864 | 4202 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_4416 | RavehSadkaT_2015_SRR1779126_bin.1_k141_4416_5 | 4350 | 4829 | + | 2.A.85.4.3 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_4416 | RavehSadkaT_2015_SRR1779126_bin.1_k141_4416_6 | 4861 | 5361 | + | 2.A.85.4.3 |
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_4416_1
Type: CAZyme
Location: 3 - 833 (-)
Type: CAZyme
Location: 3 - 833 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_4416_2
Type: TC
Location: 855 - 2720 (-)
Type: TC
Location: 855 - 2720 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_4416_3
Type: TF
Location: 2883 - 3680 (-)
Type: TF
Location: 2883 - 3680 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_4416_4
Type:
Location: 3864 - 4202 (-)
Type:
Location: 3864 - 4202 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_4416_5
Type: TC
Location: 4350 - 4829 (+)
Type: TC
Location: 4350 - 4829 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_4416_6
Type: TC
Location: 4861 - 5361 (+)
Type: TC
Location: 4861 - 5361 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.