Cluster: RavehSadkaT_2015_SRR1779126_bin.1_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: RavehSadkaT_2015_SRR1779126_bin.1
- CGC Family ID: CGCFAM_00099
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_3121 | RavehSadkaT_2015_SRR1779126_bin.1_k141_3121_1 | 3 | 1223 | + | 4.A.1.2.6 |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_3121 | RavehSadkaT_2015_SRR1779126_bin.1_k141_3121_2 | 1240 | 2676 | + | GH1 |
| pfam | RavehSadkaT_2015_SRR1779126_bin.1_k141_3121 | RavehSadkaT_2015_SRR1779126_bin.1_k141_3121_3 | 2998 | 3612 | + | VanZ |
| NULL(UNKNOWN) | RavehSadkaT_2015_SRR1779126_bin.1_k141_3121 | RavehSadkaT_2015_SRR1779126_bin.1_k141_3121_4 | 3631 | 3969 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_3121 | RavehSadkaT_2015_SRR1779126_bin.1_k141_3121_5 | 3819 | 5057 | - | 2.A.1.24.4 |
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_3121_1
Type: TC
Location: 3 - 1223 (+)
Type: TC
Location: 3 - 1223 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_3121_2
Type: CAZyme
Location: 1240 - 2676 (+)
Type: CAZyme
Location: 1240 - 2676 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_3121_3
Type: pfam
Location: 2998 - 3612 (+)
Type: pfam
Location: 2998 - 3612 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_3121_4
Type:
Location: 3631 - 3969 (+)
Type:
Location: 3631 - 3969 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_3121_5
Type: TC
Location: 3819 - 5057 (-)
Type: TC
Location: 3819 - 5057 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.