Cluster: RavehSadkaT_2015_SRR1779126_bin.1_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: RavehSadkaT_2015_SRR1779126_bin.1
- CGC Family ID: CGCFAM_06046
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_3067 | RavehSadkaT_2015_SRR1779126_bin.1_k141_3067_2 | 798 | 1532 | - | 3.A.1.3.20 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_3067 | RavehSadkaT_2015_SRR1779126_bin.1_k141_3067_3 | 1552 | 2319 | - | 3.A.1.3.20 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_3067 | RavehSadkaT_2015_SRR1779126_bin.1_k141_3067_4 | 2483 | 3298 | - | 3.A.1.3.20 |
| STP | RavehSadkaT_2015_SRR1779126_bin.1_k141_3067 | RavehSadkaT_2015_SRR1779126_bin.1_k141_3067_5 | 4069 | 4704 | - | GyrI-like |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_3067 | RavehSadkaT_2015_SRR1779126_bin.1_k141_3067_6 | 4866 | 5201 | - | 2.A.78.1.1 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_3067 | RavehSadkaT_2015_SRR1779126_bin.1_k141_3067_7 | 5198 | 5914 | - | 2.A.78.1.1 |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_3067 | RavehSadkaT_2015_SRR1779126_bin.1_k141_3067_8 | 6191 | 7003 | - | CE1 |
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_3067_2
Type: TC
Location: 798 - 1532 (-)
Type: TC
Location: 798 - 1532 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_3067_3
Type: TC
Location: 1552 - 2319 (-)
Type: TC
Location: 1552 - 2319 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_3067_4
Type: TC
Location: 2483 - 3298 (-)
Type: TC
Location: 2483 - 3298 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_3067_5
Type: STP
Location: 4069 - 4704 (-)
Type: STP
Location: 4069 - 4704 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_3067_6
Type: TC
Location: 4866 - 5201 (-)
Type: TC
Location: 4866 - 5201 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_3067_7
Type: TC
Location: 5198 - 5914 (-)
Type: TC
Location: 5198 - 5914 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_3067_8
Type: CAZyme
Location: 6191 - 7003 (-)
Type: CAZyme
Location: 6191 - 7003 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.