Cluster: RavehSadkaT_2015_SRR1779126_bin.1_CGC11
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: RavehSadkaT_2015_SRR1779126_bin.1
- CGC Family ID: CGCFAM_09127
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_3057 | RavehSadkaT_2015_SRR1779126_bin.1_k141_3057_1 | 142 | 2832 | + | 3.A.3.4.1 |
| pfam | RavehSadkaT_2015_SRR1779126_bin.1_k141_3057 | RavehSadkaT_2015_SRR1779126_bin.1_k141_3057_2 | 3031 | 3654 | + | Hydrolase | Hydrolase_like | HAD_2 |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_3057 | RavehSadkaT_2015_SRR1779126_bin.1_k141_3057_3 | 3898 | 6159 | + | GT35 |
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_3057_1
Type: TC
Location: 142 - 2832 (+)
Type: TC
Location: 142 - 2832 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_3057_2
Type: pfam
Location: 3031 - 3654 (+)
Type: pfam
Location: 3031 - 3654 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_3057_3
Type: CAZyme
Location: 3898 - 6159 (+)
Type: CAZyme
Location: 3898 - 6159 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.